Wall clock time and date at job start Mon Mar 30 2020 01:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34664 * 126.59120 * 2 1 4 4 N 1.34134 * 108.01786 * 179.81255 * 3 2 1 5 5 C 1.30496 * 109.25675 * 0.37372 * 4 3 2 6 6 N 1.35047 * 108.70161 * 359.62603 * 5 4 3 7 7 C 1.46497 * 126.40169 * 180.20738 * 6 5 4 8 8 C 1.50695 * 109.46894 * 265.02593 * 7 6 5 9 9 H 1.07995 * 120.00378 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99730 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00223 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00041 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47194 * 89.99929 * 12 10 8 14 14 H 1.48500 * 109.46905 * 210.00124 * 12 10 8 15 15 H 1.48502 * 109.46714 * 329.99811 * 12 10 8 16 16 H 1.08997 * 109.47445 * 269.96014 * 1 2 3 17 17 H 1.09008 * 109.46455 * 29.95840 * 1 2 3 18 18 H 1.08999 * 109.47529 * 149.95028 * 1 2 3 19 19 H 1.08003 * 125.99562 * 0.07282 * 3 2 1 20 20 H 1.08002 * 125.65353 * 179.89694 * 5 4 3 21 21 H 1.09004 * 109.46648 * 25.02578 * 7 6 5 22 22 H 1.08998 * 109.47362 * 145.02540 * 7 6 5 23 23 H 0.96996 * 119.99860 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6540 0.0042 5 6 3.5968 -0.6509 -0.0013 6 7 2.3229 -1.0991 -0.0008 7 6 1.8942 -2.5000 -0.0016 8 6 1.6286 -2.9432 -1.4172 9 1 1.7650 -2.2506 -2.2345 10 6 1.2113 -4.2330 -1.6689 11 7 1.0457 -5.0767 -0.6737 12 14 0.8827 -4.7827 -3.4238 13 1 2.1294 -5.3359 -4.0109 14 1 -0.1718 -5.8282 -3.4257 15 1 0.4292 -3.6207 -4.2296 16 1 -0.3634 -0.0007 1.0276 17 1 -0.3632 0.8905 -0.5132 18 1 -0.3634 -0.8895 -0.5146 19 1 1.9865 2.1118 0.0011 20 1 4.4818 -1.2699 -0.0013 21 1 2.6787 -3.1202 0.4322 22 1 0.9831 -2.6015 0.5880 23 1 0.7518 -5.9839 -0.8508 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039078174.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:50 Heat of formation + Delta-G solvation = 27.242292 kcal Electronic energy + Delta-G solvation = -9100.981194 eV Core-core repulsion = 7335.085397 eV Total energy + Delta-G solvation = -1765.895797 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.76951 -35.93364 -33.93772 -32.60656 -29.16676 -27.16901 -25.19981 -22.11317 -20.66310 -18.84435 -17.75767 -16.44274 -16.01410 -15.21393 -14.55221 -14.37969 -13.88077 -13.55833 -13.47315 -13.24179 -12.85784 -12.70521 -12.25258 -11.89902 -10.89488 -10.71133 -10.27383 -9.08780 -8.37881 -6.53983 1.31682 1.37857 1.40919 1.50861 2.23336 2.30690 2.39688 2.95022 3.94094 4.12258 4.36846 4.54450 4.68211 4.81655 4.88711 5.06973 5.16877 5.51894 5.77523 5.81289 6.02852 6.38437 6.64737 7.18227 7.27091 8.70322 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.068316 B = 0.014146 C = 0.013722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.764637 B = 1978.951528 C = 2039.961520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.037 4.037 3 C -0.061 4.061 4 N -0.530 5.530 5 C 0.155 3.845 6 N -0.439 5.439 7 C 0.246 3.754 8 C -0.556 4.556 9 H 0.052 0.948 10 C 0.024 3.976 11 N -0.917 5.917 12 Si 0.970 3.030 13 H -0.271 1.271 14 H -0.274 1.274 15 H -0.271 1.271 16 H 0.078 0.922 17 H 0.100 0.900 18 H 0.051 0.949 19 H 0.189 0.811 20 H 0.213 0.787 21 H 0.039 0.961 22 H 0.034 0.966 23 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 4.955 -0.172 5.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.155 4.155 3 C -0.209 4.209 4 N -0.249 5.249 5 C -0.126 4.126 6 N -0.119 5.119 7 C 0.125 3.875 8 C -0.594 4.594 9 H 0.071 0.929 10 C -0.178 4.178 11 N -0.555 5.555 12 Si 0.794 3.206 13 H -0.197 1.197 14 H -0.199 1.199 15 H -0.195 1.195 16 H 0.097 0.903 17 H 0.119 0.881 18 H 0.071 0.929 19 H 0.206 0.794 20 H 0.230 0.770 21 H 0.057 0.943 22 H 0.052 0.948 23 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.008 5.087 -0.104 5.187 hybrid contribution -0.692 -1.160 -0.678 1.511 sum -1.701 3.927 -0.781 4.350 Atomic orbital electron populations 1.20218 0.86105 1.03530 1.02932 1.21858 0.96192 0.86880 1.10570 1.22389 0.88261 0.99174 1.11072 1.70156 1.23460 1.09463 1.21811 1.25118 0.88618 0.91735 1.07171 1.45979 1.07147 1.08620 1.50153 1.19370 0.96279 0.73949 0.97856 1.21423 1.48088 0.97659 0.92233 0.92941 1.25731 0.94055 0.95949 1.02023 1.70000 1.45911 1.06441 1.33178 0.85362 0.78356 0.78100 0.78746 1.19670 1.19925 1.19514 0.90304 0.88100 0.92945 0.79426 0.77033 0.94311 0.94757 0.91753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.30 10.08 71.24 0.72 -1.58 14 2 C -0.04 -1.51 6.95 40.95 0.28 -1.22 14 3 C -0.06 -2.32 11.79 83.52 0.98 -1.34 14 4 N -0.53 -22.33 11.25 -200.31 -2.25 -24.58 14 5 C 0.16 6.56 12.56 180.26 2.26 8.82 14 6 N -0.44 -19.71 2.73 -518.62 -1.42 -21.13 14 7 C 0.25 12.20 5.55 85.63 0.48 12.68 14 8 C -0.56 -29.70 9.39 25.60 0.24 -29.46 14 9 H 0.05 2.89 7.81 -2.91 -0.02 2.86 14 10 C 0.02 1.25 5.46 84.66 0.46 1.72 14 11 N -0.92 -50.34 13.29 21.45 0.28 -50.05 14 12 Si 0.97 41.64 29.54 68.60 2.03 43.67 14 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 14 14 H -0.27 -11.33 7.11 99.48 0.71 -10.62 14 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 14 16 H 0.08 2.28 8.14 -2.39 -0.02 2.26 14 17 H 0.10 2.62 8.14 -2.38 -0.02 2.61 14 18 H 0.05 1.96 7.96 -2.39 -0.02 1.94 14 19 H 0.19 5.73 8.06 -2.91 -0.02 5.71 14 20 H 0.21 7.68 8.06 -2.91 -0.02 7.66 14 21 H 0.04 1.98 8.13 -2.38 -0.02 1.96 14 22 H 0.03 1.77 8.02 -2.39 -0.02 1.75 14 23 H 0.27 14.05 8.31 -92.71 -0.77 13.28 14 Total: -1.00 -59.76 212.53 5.25 -54.51 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.18 Total: 7.97 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 5.43 Total: -10.39 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -3.39 Total: -95.76 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -59.76 5.25 -54.51 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039078174.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.749 kcal (2) G-P(sol) polarization free energy of solvation -59.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds