Wall clock time and date at job start Mon Mar 30 2020 02:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00306 * 2 1 4 4 H 1.48495 * 109.47314 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46968 * 299.99977 * 3 2 1 6 6 H 1.48505 * 109.46862 * 59.99870 * 3 2 1 7 7 C 1.37881 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99572 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46958 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.35709 * 54.72016 * 10 9 7 12 12 C 1.50075 * 109.35884 * 295.00295 * 10 9 7 13 13 C 1.29443 * 124.07451 * 222.82311 * 12 10 9 14 14 C 1.50066 * 124.07673 * 0.44178 * 13 12 10 15 15 C 1.53028 * 110.14752 * 342.87087 * 14 13 12 16 16 C 1.52948 * 109.30216 * 174.15720 * 10 9 7 17 17 H 0.97009 * 119.99634 * 0.02562 * 1 2 3 18 18 H 1.09002 * 109.47204 * 60.00156 * 9 7 2 19 19 H 1.08995 * 109.47307 * 299.99488 * 9 7 2 20 20 H 1.07999 * 117.95912 * 42.79444 * 12 10 9 21 21 H 1.07994 * 117.95887 * 180.46605 * 13 12 10 22 22 H 1.08998 * 109.35982 * 222.66595 * 14 13 12 23 23 H 1.08996 * 109.35836 * 103.07539 * 14 13 12 24 24 H 1.09002 * 109.64314 * 169.12109 * 15 14 13 25 25 H 1.09002 * 109.64302 * 289.53940 * 15 14 13 26 26 H 1.08999 * 109.43391 * 49.75378 * 16 10 9 27 27 H 1.09000 * 109.79897 * 289.14698 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2508 -2.4991 0.0005 10 6 2.2450 -3.6621 0.0005 11 1 2.9313 -3.5508 0.8401 12 6 3.0231 -3.6514 -1.2827 13 6 3.2955 -4.7110 -1.9746 14 6 2.8630 -6.0970 -1.5953 15 6 2.4527 -6.1364 -0.1215 16 6 1.4820 -4.9795 0.1475 17 1 -0.4850 0.8402 -0.0004 18 1 0.6245 -2.5571 -0.8897 19 1 0.6239 -2.5567 0.8903 20 1 3.3776 -2.7004 -1.6520 21 1 3.8699 -4.5900 -2.8810 22 1 3.6878 -6.7904 -1.7592 23 1 2.0161 -6.3933 -2.2141 24 1 1.9620 -7.0848 0.0970 25 1 3.3360 -6.0274 0.5078 26 1 0.6671 -5.0093 -0.5758 27 1 1.0824 -5.0640 1.1581 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039345846.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:52 Heat of formation + Delta-G solvation = -32.892898 kcal Electronic energy + Delta-G solvation = -9275.842489 eV Core-core repulsion = 7610.879377 eV Total energy + Delta-G solvation = -1664.963111 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 166.105 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.47405 -35.33504 -32.89667 -31.80613 -28.61663 -25.25708 -22.97759 -22.18605 -18.59691 -18.43618 -16.91109 -16.43084 -15.00466 -14.79761 -14.63229 -13.74377 -13.62319 -13.41382 -13.06243 -12.93002 -12.55188 -12.26438 -12.00358 -11.53951 -11.43262 -10.92885 -10.68930 -10.53355 -9.69663 -8.19785 -6.29826 1.38279 1.38448 1.51858 1.57681 2.40333 3.13105 3.94865 4.05211 4.12925 4.55131 4.59832 4.69352 4.75613 4.83865 5.06300 5.08773 5.17549 5.27155 5.38027 5.45415 5.56805 5.73831 5.82369 5.98577 6.18753 6.32767 6.86120 7.38688 8.92501 Molecular weight = 166.11amu Principal moments of inertia in cm(-1) A = 0.085854 B = 0.012133 C = 0.011270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.057193 B = 2307.177193 C = 2483.960555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.036 3.964 10 C -0.053 4.053 11 H 0.059 0.941 12 C -0.141 4.141 13 C -0.175 4.175 14 C -0.084 4.084 15 C -0.113 4.113 16 C -0.114 4.114 17 H 0.263 0.737 18 H -0.013 1.013 19 H -0.009 1.009 20 H 0.082 0.918 21 H 0.110 0.890 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.768 -9.587 -1.788 11.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.001 4.001 10 C -0.072 4.072 11 H 0.077 0.923 12 C -0.159 4.159 13 C -0.193 4.193 14 C -0.121 4.121 15 C -0.151 4.151 16 C -0.151 4.151 17 H 0.072 0.928 18 H 0.005 0.995 19 H 0.009 0.991 20 H 0.100 0.900 21 H 0.128 0.872 22 H 0.109 0.891 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.634 -9.481 -1.792 11.173 hybrid contribution -0.009 1.376 -0.009 1.376 sum 5.625 -8.105 -1.800 10.029 Atomic orbital electron populations 1.70114 1.07816 1.27602 1.52125 1.25987 0.95753 1.03327 0.94952 0.85420 0.79059 0.78905 0.77807 1.18662 1.20394 1.20285 1.21689 0.93387 0.92207 1.49765 0.92303 1.18990 0.93894 0.92863 0.94376 1.20034 0.96432 0.95228 0.95458 0.92270 1.22110 0.98623 0.98023 0.97130 1.22223 1.02000 0.95063 1.00052 1.20459 1.01554 0.93867 0.96225 1.21593 0.98936 0.97906 0.96623 1.21643 0.98125 0.94384 1.00983 0.92839 0.99477 0.99085 0.89964 0.87205 0.89131 0.90676 0.89801 0.91933 0.93161 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.42 13.29 21.45 0.28 -58.13 15 2 C 0.00 -0.18 5.46 84.66 0.46 0.28 15 3 Si 0.96 45.32 29.54 68.60 2.03 47.34 15 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 15 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 7 C -0.53 -31.13 8.31 25.60 0.21 -30.92 15 8 H 0.06 3.33 7.38 -2.91 -0.02 3.31 15 9 C 0.04 1.97 4.40 29.85 0.13 2.10 15 10 C -0.05 -2.32 2.39 -11.75 -0.03 -2.35 15 11 H 0.06 2.60 8.14 -2.38 -0.02 2.58 15 12 C -0.14 -5.70 8.72 27.04 0.24 -5.47 15 13 C -0.18 -5.68 9.80 27.04 0.27 -5.41 15 14 C -0.08 -2.17 6.12 29.66 0.18 -1.99 15 15 C -0.11 -3.06 6.00 30.74 0.18 -2.87 15 16 C -0.11 -4.04 5.31 30.71 0.16 -3.87 15 17 H 0.26 15.33 8.31 -92.70 -0.77 14.56 15 18 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 15 19 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 15 20 H 0.08 3.66 7.25 -2.91 -0.02 3.64 15 21 H 0.11 3.13 8.06 -2.91 -0.02 3.10 15 22 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15 23 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 24 H 0.08 1.82 8.14 -2.39 -0.02 1.80 15 25 H 0.06 1.66 8.13 -2.39 -0.02 1.64 15 26 H 0.05 1.85 8.09 -2.39 -0.02 1.83 15 27 H 0.06 2.08 8.14 -2.39 -0.02 2.06 15 Total: -1.00 -64.81 224.87 5.23 -59.58 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 1.11 Total: 1.71 kcal Atomic # 6 Polarization: -52.31 SS G_CDS: 1.81 Total: -50.50 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.28 Total: -58.13 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -64.81 5.23 -59.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039345846.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.688 kcal (2) G-P(sol) polarization free energy of solvation -64.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds