Wall clock time and date at job start Mon Mar 30 2020 02:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86798 * 119.99896 * 2 1 4 4 H 1.48504 * 109.47022 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47520 * 300.00308 * 3 2 1 6 6 H 1.48505 * 109.47267 * 60.00186 * 3 2 1 7 7 C 1.40039 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99557 * 197.24699 * 7 2 1 9 9 C 1.41516 * 120.00330 * 17.25208 * 7 2 1 10 10 C 1.41119 * 121.02008 * 203.13956 * 9 7 2 11 11 C 1.37619 * 118.92758 * 180.02562 * 10 9 7 12 12 N 1.32084 * 121.05311 * 359.97438 * 11 10 9 13 13 C 1.32176 * 122.27912 * 359.70401 * 12 11 10 14 14 F 1.35095 * 119.52704 * 180.31829 * 13 12 11 15 15 C 1.38096 * 120.93972 * 0.58791 * 13 12 11 16 16 H 0.97000 * 119.99880 * 359.97438 * 1 2 3 17 17 H 1.08002 * 120.53297 * 0.02562 * 10 9 7 18 18 H 1.08004 * 119.46933 * 179.97438 * 11 10 9 19 19 H 1.08000 * 120.58104 * 179.70002 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2124 6 1 1.8826 2.3965 1.2125 7 6 2.0075 -1.2128 0.0005 8 1 3.0511 -1.2337 0.2779 9 6 1.3477 -2.4110 -0.3624 10 6 1.8280 -3.6654 0.0702 11 6 1.1530 -4.8033 -0.3087 12 7 0.0718 -4.7344 -1.0643 13 6 -0.4203 -3.5836 -1.4892 14 9 -1.5335 -3.5775 -2.2545 15 6 0.1905 -2.3879 -1.1665 16 1 -0.4850 0.8401 0.0004 17 1 2.7110 -3.7314 0.6886 18 1 1.5131 -5.7680 0.0171 19 1 -0.2138 -1.4512 -1.5208 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044370293.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:42 Heat of formation + Delta-G solvation = -28.602479 kcal Electronic energy + Delta-G solvation = -8897.503092 eV Core-core repulsion = 6908.006717 eV Total energy + Delta-G solvation = -1989.496375 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 167.044 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -47.67708 -38.12881 -34.26238 -30.83102 -29.18324 -26.17095 -22.06301 -21.33650 -17.93078 -16.09342 -15.47446 -14.90103 -14.64821 -14.36884 -13.17780 -12.80957 -12.30117 -11.86663 -11.44794 -11.28674 -10.97683 -10.37967 -10.25468 -9.55575 -8.27552 -8.18529 -7.59399 -6.99614 -4.77688 2.54238 2.63910 2.96019 3.01589 3.10404 3.75396 4.45160 5.08564 5.43203 6.03538 6.50117 6.65831 6.79017 6.96333 7.22637 7.27398 7.68138 7.97095 8.31357 8.55714 8.57521 9.25250 9.91572 Molecular weight = 167.04amu Principal moments of inertia in cm(-1) A = 0.071960 B = 0.016538 C = 0.013901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.013504 B = 1692.690674 C = 2013.769932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.075 3.925 3 Si 0.916 3.084 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.447 4.447 8 H 0.088 0.912 9 C 0.141 3.859 10 C -0.282 4.282 11 C 0.129 3.871 12 N -0.609 5.609 13 C 0.285 3.715 14 F -0.145 7.145 15 C -0.241 4.241 16 H 0.287 0.713 17 H 0.109 0.891 18 H 0.131 0.869 19 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.601 1.561 0.142 3.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.477 4.477 8 H 0.106 0.894 9 C 0.133 3.867 10 C -0.305 4.305 11 C -0.024 4.024 12 N -0.331 5.331 13 C 0.138 3.862 14 F -0.125 7.125 15 C -0.265 4.265 16 H 0.098 0.902 17 H 0.127 0.873 18 H 0.148 0.852 19 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.905 0.946 -0.124 2.131 hybrid contribution 0.463 1.509 0.166 1.587 sum 2.368 2.455 0.042 3.411 Atomic orbital electron populations 1.69774 1.07927 1.30022 1.32363 1.26082 0.94817 1.01979 0.91716 0.86123 0.80954 0.80075 0.78868 1.18060 1.19377 1.19646 1.19696 0.98237 0.90620 1.39146 0.89391 1.17645 0.89654 0.92619 0.86788 1.21904 1.05366 0.93595 1.09653 1.21602 0.90207 0.97257 0.93320 1.66638 1.17541 1.28344 1.20543 1.18069 0.84433 0.91027 0.92720 1.91433 1.50463 1.97224 1.73381 1.21907 1.01984 0.96458 1.06103 0.90212 0.87293 0.85163 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.40 10.90 55.55 0.61 -18.79 13 2 C 0.08 1.80 5.20 -17.34 -0.09 1.71 13 3 Si 0.92 17.55 29.59 -169.99 -5.03 12.52 13 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 13 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 13 6 H -0.27 -5.10 7.11 56.52 0.40 -4.70 13 7 C -0.45 -11.30 9.12 -37.66 -0.34 -11.64 13 8 H 0.09 2.09 7.90 -52.49 -0.41 1.67 13 9 C 0.14 3.70 5.61 -106.54 -0.60 3.10 13 10 C -0.28 -6.72 9.90 -38.72 -0.38 -7.10 13 11 C 0.13 2.97 11.16 -17.67 -0.20 2.78 13 12 N -0.61 -15.63 10.35 -13.77 -0.14 -15.77 13 13 C 0.29 7.54 8.40 -17.46 -0.15 7.39 13 14 F -0.15 -3.66 17.28 2.25 0.04 -3.62 13 15 C -0.24 -6.45 8.77 -38.61 -0.34 -6.79 13 16 H 0.29 6.41 8.29 -40.82 -0.34 6.07 13 17 H 0.11 2.32 8.06 -52.49 -0.42 1.89 13 18 H 0.13 2.48 8.06 -52.48 -0.42 2.06 13 19 H 0.14 3.71 6.16 -52.49 -0.32 3.38 13 LS Contribution 186.08 15.07 2.80 2.80 Total: -1.00 -27.62 186.08 -4.54 -32.16 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -0.72 Total: 1.25 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -2.10 Total: -10.55 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.46 Total: -34.57 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.04 Total: -3.62 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 2.80 Total: 2.80 kcal Total: -27.62 -4.54 -32.16 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044370293.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.554 kcal (2) G-P(sol) polarization free energy of solvation -27.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds