Wall clock time and date at job start Mon Mar 30 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47128 * 2 1 4 4 C 1.50696 * 109.47296 * 120.00455 * 2 1 3 5 5 H 1.08002 * 119.99988 * 119.99999 * 4 2 1 6 6 C 1.37881 * 120.00032 * 299.99762 * 4 2 1 7 7 N 1.31514 * 119.99967 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99687 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46961 * 90.00179 * 8 6 4 10 10 H 1.48503 * 109.46666 * 209.99885 * 8 6 4 11 11 H 1.48491 * 109.47100 * 329.99964 * 8 6 4 12 12 N 1.46504 * 109.46886 * 240.00477 * 2 1 3 13 13 C 1.36876 * 126.40093 * 120.31790 * 12 2 1 14 14 C 1.34665 * 106.82156 * 180.12098 * 13 12 2 15 15 N 1.34127 * 108.01668 * 359.58498 * 14 13 12 16 16 C 1.30500 * 109.25894 * 0.26753 * 15 14 13 17 17 H 1.09001 * 109.47128 * 180.02562 * 1 2 3 18 18 H 1.09003 * 109.46590 * 299.99313 * 1 2 3 19 19 H 1.08987 * 109.47559 * 59.99708 * 1 2 3 20 20 H 0.97004 * 119.99912 * 180.02562 * 7 6 4 21 21 H 1.08002 * 126.59064 * 0.02562 * 13 12 2 22 22 H 1.08002 * 125.99463 * 179.85418 * 14 13 12 23 23 H 1.07994 * 125.64966 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5564 8 14 0.6249 1.2789 2.6542 9 1 -0.8027 0.8724 2.6999 10 1 0.9761 1.9948 3.9069 11 1 0.8471 2.1763 1.4922 12 7 2.0183 -0.6905 -1.1963 13 6 2.8134 -0.1571 -2.1744 14 6 3.0193 -1.1297 -3.0828 15 7 2.3752 -2.2298 -2.6659 16 6 1.7733 -1.9742 -1.5366 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3632 0.5138 0.8901 19 1 -0.3634 0.5138 -0.8898 20 1 1.9036 -0.5281 4.4375 21 1 3.1999 0.8507 -2.2115 22 1 3.6044 -1.0408 -3.9863 23 1 1.1783 -2.6736 -0.9681 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048246956.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:30 Heat of formation + Delta-G solvation = 61.362743 kcal Electronic energy + Delta-G solvation = -9251.107844 eV Core-core repulsion = 7486.691621 eV Total energy + Delta-G solvation = -1764.416223 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.18076 -35.07627 -32.20812 -29.69874 -28.40932 -25.42196 -22.40243 -20.52140 -19.71176 -16.91453 -16.40178 -14.88360 -13.96962 -13.78933 -13.11002 -13.01097 -12.75912 -12.49691 -11.78644 -11.47454 -10.98887 -10.51965 -9.87094 -9.72392 -9.23011 -8.90019 -8.61500 -7.74594 -6.37459 -4.43366 2.93883 3.05203 3.12675 3.18679 3.83623 3.90580 4.10475 4.91469 5.45524 5.67416 5.82979 6.00595 6.11934 6.12424 6.35521 6.44477 6.68853 7.14597 7.32738 7.52041 7.98786 8.23122 8.65841 8.86116 9.18265 10.74597 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.079859 B = 0.016182 C = 0.015048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.534947 B = 1729.945357 C = 1860.285258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.226 3.774 3 H 0.056 0.944 4 C -0.543 4.543 5 H 0.085 0.915 6 C 0.081 3.919 7 N -0.882 5.882 8 Si 0.886 3.114 9 H -0.273 1.273 10 H -0.290 1.290 11 H -0.266 1.266 12 N -0.420 5.420 13 C -0.064 4.064 14 C -0.051 4.051 15 N -0.519 5.519 16 C 0.192 3.808 17 H 0.063 0.937 18 H 0.058 0.942 19 H 0.039 0.961 20 H 0.270 0.730 21 H 0.162 0.838 22 H 0.158 0.842 23 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.601 3.895 -6.025 7.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.124 3.876 3 H 0.073 0.927 4 C -0.580 4.580 5 H 0.103 0.897 6 C -0.124 4.124 7 N -0.518 5.518 8 Si 0.715 3.285 9 H -0.199 1.199 10 H -0.217 1.217 11 H -0.191 1.191 12 N -0.099 5.099 13 C -0.201 4.201 14 C -0.201 4.201 15 N -0.238 5.238 16 C -0.091 4.091 17 H 0.083 0.917 18 H 0.076 0.924 19 H 0.058 0.942 20 H 0.081 0.919 21 H 0.179 0.821 22 H 0.175 0.825 23 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.677 3.221 -6.053 7.361 hybrid contribution -0.497 1.614 0.797 1.867 sum -3.174 4.835 -5.256 7.815 Atomic orbital electron populations 1.22479 0.97362 1.02260 0.99978 1.19663 0.91430 0.94081 0.82465 0.92671 1.21070 1.34039 1.14996 0.87937 0.89715 1.24869 0.95400 0.96691 0.95420 1.69857 1.44015 1.39763 0.98165 0.86887 0.80745 0.83212 0.77651 1.19928 1.21672 1.19143 1.45825 1.35033 1.11035 1.17970 1.22617 1.03449 1.01113 0.92895 1.22063 1.06177 0.90344 1.01488 1.70215 1.13792 1.28118 1.11702 1.24671 1.03508 0.86040 0.94876 0.91749 0.92354 0.94184 0.91939 0.82062 0.82480 0.78737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 8.72 37.16 0.32 -2.95 14 2 C 0.23 5.05 2.56 -69.08 -0.18 4.87 14 3 H 0.06 1.23 7.14 -51.93 -0.37 0.86 14 4 C -0.54 -14.41 9.09 -34.44 -0.31 -14.72 14 5 H 0.08 2.52 7.98 -52.49 -0.42 2.10 14 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 14 7 N -0.88 -25.45 13.96 55.43 0.77 -24.68 14 8 Si 0.89 19.98 24.37 -169.99 -4.14 15.83 14 9 H -0.27 -5.94 6.87 56.52 0.39 -5.55 14 10 H -0.29 -6.59 7.11 56.52 0.40 -6.18 14 11 H -0.27 -5.68 6.53 56.52 0.37 -5.31 14 12 N -0.42 -8.97 2.61 -112.70 -0.29 -9.27 14 13 C -0.06 -1.23 11.54 -16.57 -0.19 -1.42 14 14 C -0.05 -0.98 11.87 -17.81 -0.21 -1.19 14 15 N -0.52 -11.01 11.25 -14.67 -0.17 -11.17 14 16 C 0.19 4.06 11.63 -90.37 -1.05 3.01 14 17 H 0.06 1.25 7.95 -51.93 -0.41 0.84 14 18 H 0.06 1.19 3.27 -51.93 -0.17 1.02 14 19 H 0.04 0.71 8.14 -51.94 -0.42 0.29 14 20 H 0.27 7.26 8.31 -40.82 -0.34 6.92 14 21 H 0.16 2.57 8.06 -52.49 -0.42 2.15 14 22 H 0.16 2.43 8.06 -52.49 -0.42 2.01 14 23 H 0.20 3.76 8.06 -52.49 -0.42 3.34 14 LS Contribution 200.51 15.07 3.02 3.02 Total: -1.00 -29.32 200.51 -4.77 -34.09 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -2.24 Total: 2.48 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.72 Total: -10.31 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.31 Total: -45.12 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.14 Total: 15.83 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -29.32 -4.77 -34.09 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246956.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.450 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds