Wall clock time and date at job start Mon Mar 30 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47128 * 2 1 4 4 C 1.50696 * 109.47296 * 120.00455 * 2 1 3 5 5 H 1.08002 * 119.99988 * 119.99999 * 4 2 1 6 6 C 1.37881 * 120.00032 * 299.99762 * 4 2 1 7 7 N 1.31514 * 119.99967 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99687 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46961 * 90.00179 * 8 6 4 10 10 H 1.48503 * 109.46666 * 209.99885 * 8 6 4 11 11 H 1.48491 * 109.47100 * 329.99964 * 8 6 4 12 12 N 1.46504 * 109.46886 * 240.00477 * 2 1 3 13 13 C 1.36876 * 126.40093 * 120.31790 * 12 2 1 14 14 C 1.34665 * 106.82156 * 180.12098 * 13 12 2 15 15 N 1.34127 * 108.01668 * 359.58498 * 14 13 12 16 16 C 1.30500 * 109.25894 * 0.26753 * 15 14 13 17 17 H 1.09001 * 109.47128 * 180.02562 * 1 2 3 18 18 H 1.09003 * 109.46590 * 299.99313 * 1 2 3 19 19 H 1.08987 * 109.47559 * 59.99708 * 1 2 3 20 20 H 0.97004 * 119.99912 * 180.02562 * 7 6 4 21 21 H 1.08002 * 126.59064 * 0.02562 * 13 12 2 22 22 H 1.08002 * 125.99463 * 179.85418 * 14 13 12 23 23 H 1.07994 * 125.64966 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5564 8 14 0.6249 1.2789 2.6542 9 1 -0.8027 0.8724 2.6999 10 1 0.9761 1.9948 3.9069 11 1 0.8471 2.1763 1.4922 12 7 2.0183 -0.6905 -1.1963 13 6 2.8134 -0.1571 -2.1744 14 6 3.0193 -1.1297 -3.0828 15 7 2.3752 -2.2298 -2.6659 16 6 1.7733 -1.9742 -1.5366 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3632 0.5138 0.8901 19 1 -0.3634 0.5138 -0.8898 20 1 1.9036 -0.5281 4.4375 21 1 3.1999 0.8507 -2.2115 22 1 3.6044 -1.0408 -3.9863 23 1 1.1783 -2.6736 -0.9681 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048246956.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:30 Heat of formation + Delta-G solvation = 42.781349 kcal Electronic energy + Delta-G solvation = -9251.913594 eV Core-core repulsion = 7486.691621 eV Total energy + Delta-G solvation = -1765.221973 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.75654 -36.84162 -34.16618 -31.36461 -29.95315 -27.32497 -24.13828 -22.06656 -21.36257 -18.87478 -18.12789 -16.60247 -15.66616 -15.41032 -14.90022 -14.59118 -14.30210 -14.18491 -13.42242 -13.22166 -12.76341 -12.24025 -11.65045 -11.56321 -10.91905 -10.81653 -10.31306 -9.27493 -8.42875 -6.55137 1.29530 1.34134 1.38362 1.45004 2.21902 2.23552 2.34649 2.90794 3.97232 4.13989 4.19024 4.36186 4.57926 4.64851 4.78000 4.89212 5.13009 5.29774 5.69992 5.94740 6.09447 6.44973 6.55890 7.11690 7.29517 8.73350 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.079859 B = 0.016182 C = 0.015048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.534947 B = 1729.945357 C = 1860.285258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.229 3.771 3 H 0.066 0.934 4 C -0.548 4.548 5 H 0.034 0.966 6 C 0.026 3.974 7 N -0.936 5.936 8 Si 0.952 3.048 9 H -0.257 1.257 10 H -0.294 1.294 11 H -0.239 1.239 12 N -0.432 5.432 13 C -0.068 4.068 14 C -0.057 4.057 15 N -0.537 5.537 16 C 0.173 3.827 17 H 0.062 0.938 18 H 0.058 0.942 19 H 0.068 0.932 20 H 0.273 0.727 21 H 0.195 0.805 22 H 0.191 0.809 23 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 5.815 -7.256 9.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.127 3.873 3 H 0.084 0.916 4 C -0.586 4.586 5 H 0.052 0.948 6 C -0.175 4.175 7 N -0.573 5.573 8 Si 0.777 3.223 9 H -0.182 1.182 10 H -0.222 1.222 11 H -0.162 1.162 12 N -0.111 5.111 13 C -0.203 4.203 14 C -0.205 4.205 15 N -0.257 5.257 16 C -0.110 4.110 17 H 0.081 0.919 18 H 0.077 0.923 19 H 0.087 0.913 20 H 0.082 0.918 21 H 0.212 0.788 22 H 0.208 0.792 23 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.561 5.132 -7.326 9.628 hybrid contribution -0.111 0.921 1.128 1.461 sum -3.672 6.054 -6.198 9.410 Atomic orbital electron populations 1.22382 0.95168 1.02749 1.01295 1.19530 0.93041 0.93734 0.81022 0.91598 1.21208 1.33322 1.13756 0.90337 0.94800 1.25798 0.96785 1.00197 0.94681 1.70016 1.46169 1.42174 0.98977 0.85818 0.79187 0.79053 0.78265 1.18215 1.22156 1.16206 1.45864 1.35833 1.11211 1.18159 1.23249 1.02423 1.02629 0.91991 1.22676 1.05798 0.89478 1.02572 1.70223 1.14317 1.29289 1.11878 1.24858 1.04318 0.86483 0.95334 0.91905 0.92346 0.91312 0.91773 0.78821 0.79168 0.78450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.88 8.72 71.98 0.63 -5.25 14 2 C 0.23 9.83 2.56 44.24 0.11 9.94 14 3 H 0.07 2.71 7.14 -2.39 -0.02 2.69 14 4 C -0.55 -29.41 9.09 25.60 0.23 -29.18 14 5 H 0.03 2.11 7.98 -2.91 -0.02 2.08 14 6 C 0.03 1.37 5.45 84.66 0.46 1.83 14 7 N -0.94 -55.26 13.96 21.45 0.30 -54.96 14 8 Si 0.95 39.75 24.37 68.60 1.67 41.42 14 9 H -0.26 -10.03 6.87 99.48 0.68 -9.35 14 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 14 11 H -0.24 -8.85 6.53 99.48 0.65 -8.20 14 12 N -0.43 -17.76 2.61 -510.46 -1.33 -19.09 14 13 C -0.07 -2.41 11.54 83.09 0.96 -1.45 14 14 C -0.06 -2.02 11.87 83.52 0.99 -1.03 14 15 N -0.54 -22.19 11.25 -200.32 -2.25 -24.45 14 16 C 0.17 7.22 11.63 180.26 2.10 9.32 14 17 H 0.06 2.32 7.95 -2.39 -0.02 2.30 14 18 H 0.06 2.16 3.27 -2.39 -0.01 2.16 14 19 H 0.07 2.16 8.14 -2.39 -0.02 2.14 14 20 H 0.27 14.96 8.31 -92.71 -0.77 14.19 14 21 H 0.19 5.40 8.06 -2.91 -0.02 5.38 14 22 H 0.19 5.24 8.06 -2.91 -0.02 5.22 14 23 H 0.20 7.80 8.06 -2.91 -0.02 7.77 14 Total: -1.00 -63.20 200.51 4.98 -58.22 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.11 Total: 14.66 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 5.48 Total: -15.81 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -3.29 Total: -98.50 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.67 Total: 41.42 kcal Total: -63.20 4.98 -58.22 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048246956.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.006 kcal (2) G-P(sol) polarization free energy of solvation -63.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds