Wall clock time and date at job start Mon Mar 30 2020 01:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47198 * 2 1 4 4 C 1.35662 * 125.39389 * 90.00339 * 3 2 1 5 5 C 1.39758 * 107.35356 * 180.02562 * 4 3 2 6 6 C 1.39551 * 106.45253 * 0.02562 * 5 4 3 7 7 C 1.39749 * 126.20176 * 180.02562 * 6 5 4 8 8 H 1.08000 * 120.00126 * 6.31070 * 7 6 5 9 9 C 1.40158 * 120.00062 * 186.30883 * 7 6 5 10 10 N 1.30813 * 120.00007 * 183.14251 * 9 7 6 11 11 Si 1.86797 * 120.00025 * 2.87168 * 9 7 6 12 12 H 1.48496 * 109.47596 * 180.27482 * 11 9 7 13 13 H 1.48503 * 109.46984 * 300.27355 * 11 9 7 14 14 H 1.48496 * 109.47393 * 60.27115 * 11 9 7 15 15 O 1.34242 * 125.38997 * 270.33984 * 3 2 1 16 16 H 1.09001 * 109.47365 * 59.99263 * 1 2 3 17 17 H 1.08999 * 109.47228 * 180.02562 * 1 2 3 18 18 H 1.09005 * 109.46945 * 299.99873 * 1 2 3 19 19 H 1.09000 * 109.46552 * 240.00333 * 2 1 3 20 20 H 1.08996 * 109.46957 * 120.00504 * 2 1 3 21 21 H 1.08007 * 126.31714 * 0.05770 * 4 3 2 22 22 H 1.07998 * 126.77111 * 180.02562 * 5 4 3 23 23 H 0.96999 * 119.99775 * 354.48873 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2943 2.1616 1.1059 5 6 2.7367 3.4147 0.6731 6 6 2.7229 3.3785 -0.7219 7 6 3.0907 4.4199 -1.5782 8 1 3.5202 5.3248 -1.1745 9 6 2.9021 4.2899 -2.9610 10 7 3.3025 5.2386 -3.7677 11 14 2.0859 2.7586 -3.6524 12 1 2.0112 2.8624 -5.1318 13 1 2.8824 1.5619 -3.2798 14 1 0.7151 2.6338 -3.0952 15 8 2.2854 2.1559 -1.0944 16 1 -0.3634 0.5139 -0.8899 17 1 -0.3633 -1.0276 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 1.8932 -0.5138 -0.8900 20 1 1.8933 -0.5139 0.8899 21 1 2.1822 1.8417 2.1314 22 1 3.0312 4.2467 1.2955 23 1 3.6566 6.0658 -3.4056 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051952492.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:27 Heat of formation + Delta-G solvation = -24.694792 kcal Electronic energy + Delta-G solvation = -9218.915083 eV Core-core repulsion = 7418.474374 eV Total energy + Delta-G solvation = -1800.440709 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.073 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.67756 -33.96625 -33.02949 -31.20216 -28.75235 -24.75697 -21.97354 -20.12182 -19.34142 -18.13991 -15.45616 -14.58378 -13.98953 -13.76769 -13.62899 -12.61260 -12.21149 -11.72729 -11.56082 -11.07744 -10.93701 -10.79978 -10.30116 -9.90842 -9.57024 -9.38581 -8.40195 -7.44170 -7.24372 -4.50432 2.99893 3.25149 3.50098 3.54276 4.01816 4.08010 4.71697 5.13924 5.58098 5.75872 5.87621 6.22330 6.32004 6.33889 6.51037 6.65066 7.00284 7.30092 7.42612 7.50269 7.91752 8.08309 8.39295 8.52389 8.96419 9.98349 Molecular weight = 166.07amu Principal moments of inertia in cm(-1) A = 0.058430 B = 0.020690 C = 0.015953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.088493 B = 1353.006868 C = 1754.769228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.157 4.157 4 C -0.146 4.146 5 C -0.392 4.392 6 C 0.183 3.817 7 C -0.495 4.495 8 H 0.097 0.903 9 C 0.042 3.958 10 N -0.814 5.814 11 Si 1.076 2.924 12 H -0.285 1.285 13 H -0.264 1.264 14 H -0.271 1.271 15 O -0.207 6.207 16 H 0.053 0.947 17 H 0.049 0.951 18 H 0.053 0.947 19 H 0.061 0.939 20 H 0.072 0.928 21 H 0.114 0.886 22 H 0.113 0.887 23 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.422 -6.900 2.762 8.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.058 4.058 3 C -0.203 4.203 4 C -0.166 4.166 5 C -0.413 4.413 6 C 0.132 3.868 7 C -0.524 4.524 8 H 0.115 0.885 9 C -0.177 4.177 10 N -0.438 5.438 11 Si 0.903 3.097 12 H -0.212 1.212 13 H -0.190 1.190 14 H -0.197 1.197 15 O -0.109 6.109 16 H 0.073 0.927 17 H 0.068 0.932 18 H 0.072 0.928 19 H 0.080 0.920 20 H 0.090 0.910 21 H 0.132 0.868 22 H 0.131 0.869 23 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.839 -7.673 1.068 8.646 hybrid contribution 0.592 1.172 1.810 2.237 sum -3.247 -6.501 2.879 7.816 Atomic orbital electron populations 1.21829 0.96030 1.00425 1.02227 1.19614 0.94802 0.89747 1.01680 1.21485 1.18845 0.95425 0.84559 1.20811 1.04159 0.95020 0.96574 1.21187 1.27002 0.99717 0.93345 1.19860 0.91628 0.82168 0.93165 1.19776 1.39303 1.00620 0.92721 0.88470 1.27347 0.92917 1.03972 0.93506 1.70574 1.28243 1.05839 1.39181 0.83323 0.78046 0.73605 0.74760 1.21246 1.19001 1.19715 1.83765 1.69880 1.23519 1.33758 0.92739 0.93191 0.92765 0.91987 0.90983 0.86764 0.86889 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.89 37.16 0.37 -1.98 14 2 C -0.02 -0.38 6.46 -27.88 -0.18 -0.56 14 3 C -0.16 -3.71 6.57 -35.23 -0.23 -3.94 14 4 C -0.15 -3.47 10.75 -39.94 -0.43 -3.90 14 5 C -0.39 -10.34 10.95 -38.52 -0.42 -10.76 14 6 C 0.18 5.13 6.51 -38.53 -0.25 4.88 14 7 C -0.49 -14.11 9.77 -38.30 -0.37 -14.48 14 8 H 0.10 2.78 8.06 -52.49 -0.42 2.36 14 9 C 0.04 1.16 5.52 -17.26 -0.10 1.07 14 10 N -0.81 -22.41 13.65 55.56 0.76 -21.65 14 11 Si 1.08 25.93 25.93 -169.99 -4.41 21.52 14 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 14 13 H -0.26 -6.31 6.82 56.52 0.39 -5.93 14 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 14 15 O -0.21 -5.55 6.08 3.67 0.02 -5.53 14 16 H 0.05 0.93 8.14 -51.93 -0.42 0.51 14 17 H 0.05 0.63 8.14 -51.93 -0.42 0.21 14 18 H 0.05 0.84 8.14 -51.93 -0.42 0.42 14 19 H 0.06 1.07 8.14 -51.93 -0.42 0.65 14 20 H 0.07 1.12 8.14 -51.93 -0.42 0.70 14 21 H 0.11 2.32 8.06 -52.48 -0.42 1.90 14 22 H 0.11 2.83 8.06 -52.49 -0.42 2.41 14 23 H 0.29 7.56 8.73 -40.82 -0.36 7.21 14 LS Contribution 206.71 15.07 3.12 3.12 Total: -1.00 -29.28 206.71 -4.68 -33.96 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -2.55 Total: -1.74 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: -1.61 Total: -29.68 kcal Atomic # 7 Polarization: -22.41 SS G_CDS: 0.76 Total: -21.65 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: 0.02 Total: -5.53 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -4.41 Total: 21.52 kcal Total LS contribution 3.12 Total: 3.12 kcal Total: -29.28 -4.68 -33.96 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051952492.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.263 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds