Wall clock time and date at job start Mon Mar 30 2020 01:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31052 * 1 3 3 Si 1.86806 * 120.00021 * 2 1 4 4 H 1.48495 * 109.47055 * 274.98739 * 3 2 1 5 5 H 1.48499 * 109.47130 * 34.98467 * 3 2 1 6 6 H 1.48497 * 109.46963 * 154.98451 * 3 2 1 7 7 C 1.39359 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99861 * 186.25074 * 7 2 1 9 9 N 1.36601 * 120.00075 * 6.24050 * 7 2 1 10 10 N 1.39964 * 119.91160 * 353.28845 * 9 7 2 11 11 C 1.30773 * 120.79459 * 179.97438 * 10 9 7 12 12 C 1.40216 * 120.56689 * 359.97438 * 11 10 9 13 13 C 1.36320 * 119.75927 * 0.25014 * 12 11 10 14 14 C 1.34843 * 119.90908 * 173.25837 * 9 7 2 15 15 O 1.22007 * 120.27051 * 0.02562 * 14 9 7 16 16 H 0.97005 * 119.99974 * 359.97438 * 1 2 3 17 17 H 1.07996 * 119.71590 * 180.02562 * 11 10 9 18 18 H 1.07997 * 120.12264 * 179.97438 * 12 11 10 19 19 H 1.08000 * 120.37412 * 179.74407 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2446 1.6178 0.0000 4 1 2.3866 2.1073 -1.3947 5 1 1.4987 2.6200 0.8027 6 1 3.5908 1.4121 0.5920 7 6 2.0073 -1.2069 -0.0005 8 1 3.0824 -1.2097 0.1013 9 7 1.3303 -2.3863 -0.1297 10 7 -0.0692 -2.3925 -0.1199 11 6 -0.7347 -3.5115 -0.2427 12 6 -0.0583 -4.7311 -0.3876 13 6 1.3047 -4.7522 -0.3956 14 6 2.0123 -3.5415 -0.2668 15 8 3.2324 -3.5381 -0.2756 16 1 -0.4850 0.8401 0.0004 17 1 -1.8145 -3.4960 -0.2333 18 1 -0.6151 -5.6510 -0.4881 19 1 1.8358 -5.6865 -0.5024 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061403085.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:04 Heat of formation + Delta-G solvation = 36.427888 kcal Electronic energy + Delta-G solvation = -9064.676992 eV Core-core repulsion = 7163.346418 eV Total energy + Delta-G solvation = -1901.330574 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 166.048 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.39631 -35.53876 -34.27966 -31.65342 -29.65498 -26.12612 -23.29452 -21.65164 -18.59914 -16.67687 -15.47442 -14.94168 -14.76732 -14.27004 -13.67967 -12.35742 -11.78556 -11.67181 -11.47656 -11.09270 -10.99443 -10.59483 -10.02808 -9.39793 -8.78180 -8.18069 -7.55029 -6.75054 -4.32957 1.85390 2.97765 3.00433 3.06714 3.16079 3.67025 4.17779 4.44232 5.20995 5.70248 5.94814 6.05299 6.46159 6.91888 7.14625 7.30487 7.43771 7.73439 8.16415 8.61223 9.37032 9.71418 10.08747 Molecular weight = 166.05amu Principal moments of inertia in cm(-1) A = 0.074086 B = 0.019458 C = 0.015510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.846159 B = 1438.637230 C = 1804.807895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.032 3.968 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.258 4.258 8 H 0.135 0.865 9 N -0.189 5.189 10 N -0.187 5.187 11 C -0.038 4.038 12 C -0.139 4.139 13 C -0.234 4.234 14 C 0.412 3.588 15 O -0.613 6.613 16 H 0.279 0.721 17 H 0.159 0.841 18 H 0.112 0.888 19 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.699 0.279 -0.128 2.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.186 4.186 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.396 4.396 8 H 0.152 0.848 9 N 0.011 4.989 10 N -0.016 5.016 11 C -0.216 4.216 12 C -0.166 4.166 13 C -0.264 4.264 14 C 0.220 3.780 15 O -0.503 6.503 16 H 0.090 0.910 17 H 0.176 0.824 18 H 0.130 0.870 19 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.426 1.241 -0.026 2.725 hybrid contribution 0.236 -0.333 -0.142 0.432 sum -2.190 0.908 -0.168 2.377 Atomic orbital electron populations 1.70192 1.06595 1.28660 1.31543 1.25919 0.95808 1.00916 0.95964 0.85652 0.79877 0.78728 0.79247 1.19251 1.19773 1.18165 1.20656 0.94197 0.81152 1.43617 0.84771 1.46201 1.03226 1.07980 1.41447 1.76665 0.88236 1.22425 1.14261 1.23362 1.00160 0.89684 1.08381 1.21355 0.94650 0.98045 1.02592 1.21778 0.94472 0.97768 1.12424 1.17421 0.88720 0.84806 0.87043 1.90737 1.12787 1.86373 1.60374 0.90980 0.82438 0.86957 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -18.93 11.32 55.51 0.63 -18.30 13 2 C 0.03 0.81 5.49 -17.47 -0.10 0.71 13 3 Si 0.94 18.55 29.56 -169.99 -5.02 13.53 13 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 13 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 13 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 13 7 C -0.26 -7.15 9.62 -15.01 -0.14 -7.29 13 8 H 0.13 3.70 7.19 -52.49 -0.38 3.32 13 9 N -0.19 -5.36 3.62 -13.73 -0.05 -5.41 13 10 N -0.19 -4.94 8.87 30.69 0.27 -4.67 13 11 C -0.04 -0.85 11.32 -17.26 -0.20 -1.04 13 12 C -0.14 -2.88 10.06 -39.53 -0.40 -3.27 13 13 C -0.23 -5.55 10.01 -39.29 -0.39 -5.94 13 14 C 0.41 11.64 7.45 -15.25 -0.11 11.52 13 15 O -0.61 -18.82 16.71 4.91 0.08 -18.73 13 16 H 0.28 6.38 8.30 -40.82 -0.34 6.04 13 17 H 0.16 2.84 8.06 -52.49 -0.42 2.42 13 18 H 0.11 1.84 8.06 -52.49 -0.42 1.41 13 19 H 0.13 2.69 8.06 -52.49 -0.42 2.26 13 LS Contribution 185.01 15.07 2.79 2.79 Total: -1.00 -31.39 185.01 -3.42 -34.82 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -0.78 Total: 1.29 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -1.34 Total: -5.31 kcal Atomic # 7 Polarization: -29.23 SS G_CDS: 0.85 Total: -28.38 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.08 Total: -18.73 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Total LS contribution 2.79 Total: 2.79 kcal Total: -31.39 -3.42 -34.82 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061403085.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.246 kcal (2) G-P(sol) polarization free energy of solvation -31.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds