Wall clock time and date at job start Mon Mar 30 2020 02:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 N 1.46900 * 109.46780 * 299.72183 * 9 7 2 12 12 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 13 13 C 1.34515 * 125.78776 * 259.71251 * 12 9 7 14 14 C 1.41377 * 106.84003 * 179.89114 * 13 12 9 15 15 C 1.34510 * 106.84280 * 0.37334 * 14 13 12 16 16 O 1.34296 * 125.79071 * 80.02356 * 12 9 7 17 17 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 18 18 H 1.00903 * 111.00086 * 299.99570 * 11 9 7 19 19 H 1.00902 * 111.00206 * 63.95508 * 11 9 7 20 20 H 1.08006 * 126.57879 * 0.02820 * 13 12 9 21 21 H 1.08005 * 126.57792 * 180.16061 * 14 13 12 22 22 H 1.08000 * 125.79348 * 179.75051 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 7 0.4063 -2.5823 1.1937 12 6 2.2302 -3.6447 -0.0104 13 6 2.5934 -4.3644 -1.0872 14 6 3.5265 -5.3278 -0.6402 15 6 3.6715 -5.1447 0.6845 16 8 2.8839 -4.1238 1.0605 17 1 -0.4850 0.8401 -0.0004 18 1 0.9642 -2.5347 2.0330 19 1 -0.3010 -1.8627 1.1883 20 1 2.2414 -4.2304 -2.0995 21 1 4.0245 -6.0708 -1.2455 22 1 4.3123 -5.7209 1.3354 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071495231.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:41 Heat of formation + Delta-G solvation = 4.783300 kcal Electronic energy + Delta-G solvation = -9254.796546 eV Core-core repulsion = 7390.208192 eV Total energy + Delta-G solvation = -1864.588354 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.069 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.62822 -34.75645 -32.11377 -31.37290 -28.36366 -25.84421 -22.45445 -20.84093 -19.37847 -16.78619 -16.42010 -14.94178 -14.82894 -14.06630 -13.47188 -12.81450 -12.10188 -11.96029 -11.42239 -11.35389 -10.96331 -10.81654 -10.09319 -10.01069 -9.12192 -8.73913 -7.65251 -7.23086 -6.16309 -4.33955 2.66406 3.20607 3.27341 3.31443 3.49171 3.96136 4.29846 5.06420 5.60507 5.75289 5.93584 6.49133 6.61889 6.70263 6.96165 7.28201 7.36241 7.68154 7.92259 8.15969 8.56525 8.83136 9.04837 9.37991 10.81135 Molecular weight = 167.07amu Principal moments of inertia in cm(-1) A = 0.072867 B = 0.014874 C = 0.013782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.168122 B = 1881.989738 C = 2031.075920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.067 3.933 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.278 3.722 10 H 0.069 0.931 11 N -0.850 5.850 12 C 0.070 3.930 13 C -0.257 4.257 14 C -0.211 4.211 15 C -0.084 4.084 16 O -0.172 6.172 17 H 0.268 0.732 18 H 0.319 0.681 19 H 0.359 0.641 20 H 0.138 0.862 21 H 0.135 0.865 22 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.124 -4.703 0.436 6.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.135 4.135 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.077 0.923 9 C 0.167 3.833 10 H 0.086 0.914 11 N -0.380 5.380 12 C 0.018 3.982 13 C -0.276 4.276 14 C -0.231 4.231 15 C -0.151 4.151 16 O -0.067 6.067 17 H 0.078 0.922 18 H 0.128 0.872 19 H 0.175 0.825 20 H 0.156 0.844 21 H 0.153 0.847 22 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 3.705 -5.193 0.447 6.395 hybrid contribution 1.033 1.698 -0.137 1.992 sum 4.737 -3.495 0.309 5.895 Atomic orbital electron populations 1.69737 1.05877 1.27557 1.50029 1.25009 0.95016 0.99470 0.94044 0.86402 0.79785 0.82397 0.78343 1.20374 1.20987 1.19780 1.21790 0.93906 0.90752 1.52509 0.92333 1.17769 0.87168 0.85490 0.92825 0.91387 1.59441 1.18457 1.56077 1.04063 1.23609 0.94962 0.96071 0.83559 1.21393 1.05489 1.00811 0.99953 1.21646 1.03362 1.02869 0.95186 1.23717 1.00839 0.94412 0.96134 1.84034 1.45939 1.39804 1.36939 0.92206 0.87245 0.82469 0.84432 0.84694 0.79452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 11.55 55.43 0.64 -23.83 14 2 C 0.07 1.82 5.38 -17.82 -0.10 1.73 14 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.97 14 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 14 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 14 7 C -0.55 -15.16 8.71 -34.44 -0.30 -15.46 14 8 H 0.06 1.65 7.74 -52.49 -0.41 1.24 14 9 C 0.28 7.20 3.17 -70.02 -0.22 6.98 14 10 H 0.07 1.87 8.13 -51.93 -0.42 1.44 14 11 N -0.85 -21.10 9.18 -6.65 -0.06 -21.16 14 12 C 0.07 1.66 6.08 -35.62 -0.22 1.45 14 13 C -0.26 -5.50 10.80 -39.70 -0.43 -5.92 14 14 C -0.21 -3.89 10.91 -39.71 -0.43 -4.32 14 15 C -0.08 -1.52 12.09 29.41 0.36 -1.17 14 16 O -0.17 -3.85 10.53 5.71 0.06 -3.78 14 17 H 0.27 6.97 8.31 -40.82 -0.34 6.63 14 18 H 0.32 7.70 8.88 -39.29 -0.35 7.35 14 19 H 0.36 9.24 7.09 -39.29 -0.28 8.96 14 20 H 0.14 2.73 8.06 -52.48 -0.42 2.31 14 21 H 0.14 2.01 8.06 -52.48 -0.42 1.59 14 22 H 0.19 2.51 8.06 -52.49 -0.42 2.08 14 LS Contribution 203.57 15.07 3.07 3.07 Total: -1.00 -28.39 203.57 -4.51 -32.91 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -1.86 Total: 13.55 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: -1.34 Total: -16.73 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.58 Total: -44.99 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: 0.06 Total: -3.78 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -28.39 -4.51 -32.91 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071495231.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.691 kcal (2) G-P(sol) polarization free energy of solvation -28.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds