Wall clock time and date at job start Mon Mar 30 2020 02:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53234 * 108.53917 * 128.92764 * 3 2 1 5 5 C 1.52956 * 109.40419 * 54.62280 * 4 3 2 6 6 C 1.50705 * 109.35348 * 176.33636 * 5 4 3 7 7 H 1.07998 * 120.00249 * 120.32024 * 6 5 4 8 8 C 1.37876 * 119.99853 * 300.31631 * 6 5 4 9 9 N 1.31518 * 120.00070 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00214 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47079 * 89.99563 * 10 8 6 12 12 H 1.48499 * 109.47341 * 209.99985 * 10 8 6 13 13 H 1.48501 * 109.46990 * 330.00065 * 10 8 6 14 14 C 1.52960 * 109.81835 * 296.40343 * 5 4 3 15 15 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 16 16 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 17 17 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 18 18 H 1.09007 * 109.62335 * 248.63908 * 3 2 1 19 19 H 1.08996 * 109.62750 * 9.20445 * 3 2 1 20 20 H 1.09002 * 109.47375 * 294.64440 * 4 3 2 21 21 H 1.08999 * 109.48358 * 174.60290 * 4 3 2 22 22 H 1.09002 * 109.41534 * 56.51334 * 5 4 3 23 23 H 0.97000 * 120.00296 * 180.02562 * 9 8 6 24 24 H 1.09005 * 109.48090 * 303.61775 * 14 5 4 25 25 H 1.08998 * 109.49622 * 183.58621 * 14 5 4 26 26 H 1.09001 * 109.62477 * 350.79006 * 15 2 1 27 27 H 1.08996 * 109.62421 * 111.17059 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1192 1.2488 1.1302 5 6 3.9848 -0.0024 0.9725 6 6 5.0577 -0.0041 2.0308 7 1 5.1157 -0.8167 2.7398 8 6 5.9654 1.0318 2.0938 9 7 5.8952 2.0211 1.2301 10 14 7.2958 1.0294 3.4051 11 1 8.5011 0.3342 2.8862 12 1 7.6452 2.4288 3.7584 13 1 6.7988 0.3232 4.6132 14 6 3.1191 -1.2543 1.1242 15 6 2.0857 -1.2987 -0.0062 16 1 -0.5400 -0.9354 -0.0046 17 1 -0.5399 0.9352 0.0045 18 1 2.5945 1.4211 -0.9562 19 1 1.4034 2.1326 0.1642 20 1 2.6057 1.2169 2.0911 21 1 3.7509 2.1359 1.0846 22 1 4.4488 -0.0001 -0.0138 23 1 6.5340 2.7497 1.2742 24 1 2.6057 -1.2270 2.0854 25 1 3.7506 -2.1414 1.0745 26 1 1.4034 -2.1335 0.1541 27 1 2.5918 -1.4183 -0.9642 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075525064.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:10 Heat of formation + Delta-G solvation = -11.244894 kcal Electronic energy + Delta-G solvation = -9482.814096 eV Core-core repulsion = 7818.789713 eV Total energy + Delta-G solvation = -1664.024383 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 166.105 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.58059 -33.35172 -30.97837 -29.90591 -26.45487 -23.31379 -21.81695 -19.58957 -17.48125 -16.29361 -14.60344 -14.09731 -13.80570 -12.99503 -12.59994 -12.55321 -11.95978 -11.36527 -10.97233 -10.86328 -10.67737 -10.46121 -10.21280 -9.69325 -9.37949 -8.98356 -8.74815 -8.32849 -8.20261 -5.94263 -4.00928 2.86135 3.32495 3.39138 3.42671 4.46845 5.34550 5.40193 5.58630 5.97742 6.11066 6.28399 6.34314 6.40294 6.48428 6.64442 6.74038 6.85838 7.13405 7.18827 7.30585 7.46528 7.61691 7.79162 8.06498 8.20284 8.51595 9.03316 9.63494 11.10784 Molecular weight = 166.11amu Principal moments of inertia in cm(-1) A = 0.089871 B = 0.013906 C = 0.012758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.483539 B = 2013.040769 C = 2194.169546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.087 4.087 3 C -0.091 4.091 4 C -0.107 4.107 5 C 0.046 3.954 6 C -0.512 4.512 7 H 0.054 0.946 8 C 0.060 3.940 9 N -0.891 5.891 10 Si 0.890 3.110 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.275 1.275 14 C -0.105 4.105 15 C -0.089 4.089 16 H 0.087 0.913 17 H 0.089 0.911 18 H 0.064 0.936 19 H 0.049 0.951 20 H 0.032 0.968 21 H 0.096 0.904 22 H 0.025 0.975 23 H 0.259 0.741 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.739 -2.475 -1.513 6.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.087 4.087 3 C -0.128 4.128 4 C -0.145 4.145 5 C 0.028 3.972 6 C -0.550 4.550 7 H 0.072 0.928 8 C -0.141 4.141 9 N -0.531 5.531 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.200 1.200 14 C -0.143 4.143 15 C -0.126 4.126 16 H 0.106 0.894 17 H 0.107 0.893 18 H 0.083 0.917 19 H 0.067 0.933 20 H 0.051 0.949 21 H 0.114 0.886 22 H 0.043 0.957 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.642 -2.306 -1.549 6.288 hybrid contribution 0.672 0.076 0.708 0.979 sum -4.969 -2.230 -0.841 5.511 Atomic orbital electron populations 1.23386 0.95097 1.00654 1.08319 1.22271 0.94771 0.97044 0.94607 1.20989 0.97922 0.92719 1.01178 1.21657 0.95172 1.03842 0.93831 1.18646 0.92104 0.89220 0.97221 1.21260 1.12369 1.06473 1.14900 0.92795 1.24976 0.97588 0.95620 0.95922 1.69868 1.36531 1.10525 1.36141 0.86632 0.82254 0.77128 0.82208 1.20755 1.21280 1.19991 1.21652 0.96169 1.00463 0.96007 1.20904 0.97800 0.93640 1.00254 0.89448 0.89270 0.91735 0.93269 0.94910 0.88625 0.95656 0.93090 0.93401 0.93239 0.92996 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.91 13.99 29.01 0.41 -3.51 15 2 C -0.09 -1.63 5.35 -100.51 -0.54 -2.17 15 3 C -0.09 -1.85 6.03 -27.49 -0.17 -2.02 15 4 C -0.11 -2.59 5.03 -26.63 -0.13 -2.72 15 5 C 0.05 1.18 2.01 -91.81 -0.18 0.99 15 6 C -0.51 -14.27 8.56 -34.44 -0.29 -14.56 15 7 H 0.05 1.49 7.74 -52.49 -0.41 1.08 15 8 C 0.06 1.66 5.29 -17.82 -0.09 1.57 15 9 N -0.89 -25.62 11.27 55.43 0.62 -24.99 15 10 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 15 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 13 H -0.27 -6.56 7.11 56.52 0.40 -6.15 15 14 C -0.11 -2.27 5.15 -26.63 -0.14 -2.41 15 15 C -0.09 -1.65 6.03 -27.48 -0.17 -1.81 15 16 H 0.09 1.29 7.92 -52.48 -0.42 0.88 15 17 H 0.09 1.36 7.92 -52.49 -0.42 0.95 15 18 H 0.06 1.32 8.14 -51.93 -0.42 0.90 15 19 H 0.05 0.92 7.89 -51.93 -0.41 0.51 15 20 H 0.03 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.10 2.57 5.94 -51.93 -0.31 2.26 15 22 H 0.03 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.05 0.85 7.89 -51.93 -0.41 0.44 15 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 LS Contribution 222.04 15.07 3.35 3.35 Total: -1.00 -28.01 222.04 -6.40 -34.41 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -4.04 Total: -2.54 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: -1.31 Total: -26.64 kcal Atomic # 7 Polarization: -25.62 SS G_CDS: 0.62 Total: -24.99 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -28.01 -6.40 -34.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075525064.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.161 kcal (2) G-P(sol) polarization free energy of solvation -28.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds