Wall clock time and date at job start Mon Mar 30 2020 02:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.51262 * 120.84941 * 2 1 4 4 C 1.53234 * 108.53917 * 128.92764 * 3 2 1 5 5 C 1.52956 * 109.40419 * 54.62280 * 4 3 2 6 6 C 1.50705 * 109.35348 * 176.33636 * 5 4 3 7 7 H 1.07998 * 120.00249 * 120.32024 * 6 5 4 8 8 C 1.37876 * 119.99853 * 300.31631 * 6 5 4 9 9 N 1.31518 * 120.00070 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00214 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47079 * 89.99563 * 10 8 6 12 12 H 1.48499 * 109.47341 * 209.99985 * 10 8 6 13 13 H 1.48501 * 109.46990 * 330.00065 * 10 8 6 14 14 C 1.52960 * 109.81835 * 296.40343 * 5 4 3 15 15 C 1.51276 * 120.84804 * 180.27541 * 2 1 3 16 16 H 1.08005 * 119.99835 * 179.72030 * 1 2 3 17 17 H 1.07992 * 119.99731 * 359.72145 * 1 2 3 18 18 H 1.09007 * 109.62335 * 248.63908 * 3 2 1 19 19 H 1.08996 * 109.62750 * 9.20445 * 3 2 1 20 20 H 1.09002 * 109.47375 * 294.64440 * 4 3 2 21 21 H 1.08999 * 109.48358 * 174.60290 * 4 3 2 22 22 H 1.09002 * 109.41534 * 56.51334 * 5 4 3 23 23 H 0.97000 * 120.00296 * 180.02562 * 9 8 6 24 24 H 1.09005 * 109.48090 * 303.61775 * 14 5 4 25 25 H 1.08998 * 109.49622 * 183.58621 * 14 5 4 26 26 H 1.09001 * 109.62477 * 350.79006 * 15 2 1 27 27 H 1.08996 * 109.62421 * 111.17059 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0857 1.2986 0.0000 4 6 3.1192 1.2488 1.1302 5 6 3.9848 -0.0024 0.9725 6 6 5.0577 -0.0041 2.0308 7 1 5.1157 -0.8167 2.7398 8 6 5.9654 1.0318 2.0938 9 7 5.8952 2.0211 1.2301 10 14 7.2958 1.0294 3.4051 11 1 8.5011 0.3342 2.8862 12 1 7.6452 2.4288 3.7584 13 1 6.7988 0.3232 4.6132 14 6 3.1191 -1.2543 1.1242 15 6 2.0857 -1.2987 -0.0062 16 1 -0.5400 -0.9354 -0.0046 17 1 -0.5399 0.9352 0.0045 18 1 2.5945 1.4211 -0.9562 19 1 1.4034 2.1326 0.1642 20 1 2.6057 1.2169 2.0911 21 1 3.7509 2.1359 1.0846 22 1 4.4488 -0.0001 -0.0138 23 1 6.5340 2.7497 1.2742 24 1 2.6057 -1.2270 2.0854 25 1 3.7506 -2.1414 1.0745 26 1 1.4034 -2.1335 0.1541 27 1 2.5918 -1.4183 -0.9642 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075525064.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:10 Heat of formation + Delta-G solvation = -26.317353 kcal Electronic energy + Delta-G solvation = -9483.467687 eV Core-core repulsion = 7818.789713 eV Total energy + Delta-G solvation = -1664.677974 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 166.105 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.24885 -35.25680 -32.80258 -31.60289 -28.28747 -25.15906 -23.52202 -21.39747 -19.03508 -18.40867 -16.61144 -15.54864 -15.46329 -14.75328 -14.34476 -14.27195 -13.79241 -13.03179 -12.79130 -12.66741 -12.52997 -12.19445 -11.96448 -11.54444 -11.27359 -10.84679 -10.59127 -10.36204 -9.75225 -8.06747 -6.21915 1.40808 1.41480 1.49218 1.52027 2.43930 3.18561 3.96985 4.09566 4.45791 4.56180 4.65139 4.79237 4.82574 4.94234 5.07663 5.08542 5.17350 5.34180 5.42462 5.58382 5.66722 5.81414 6.00401 6.14271 6.23109 6.42505 6.90681 7.46067 8.96543 Molecular weight = 166.11amu Principal moments of inertia in cm(-1) A = 0.089871 B = 0.013906 C = 0.012758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.483539 B = 2013.040769 C = 2194.169546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.101 4.101 5 C 0.042 3.958 6 C -0.537 4.537 7 H 0.050 0.950 8 C 0.010 3.990 9 N -0.917 5.917 10 Si 0.954 3.046 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.269 1.269 14 C -0.100 4.100 15 C -0.081 4.081 16 H 0.112 0.888 17 H 0.103 0.897 18 H 0.054 0.946 19 H 0.065 0.935 20 H 0.024 0.976 21 H 0.062 0.938 22 H -0.006 1.006 23 H 0.260 0.740 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.001 -3.177 -1.250 7.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.139 4.139 5 C 0.023 3.977 6 C -0.575 4.575 7 H 0.069 0.931 8 C -0.188 4.188 9 N -0.557 5.557 10 Si 0.780 3.220 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.194 1.194 14 C -0.138 4.138 15 C -0.118 4.118 16 H 0.130 0.870 17 H 0.121 0.879 18 H 0.073 0.927 19 H 0.084 0.916 20 H 0.043 0.957 21 H 0.081 0.919 22 H 0.012 0.988 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.911 -3.017 -1.290 7.651 hybrid contribution 1.012 0.305 0.611 1.221 sum -5.899 -2.712 -0.679 6.528 Atomic orbital electron populations 1.23690 0.94089 1.02545 1.03552 1.22127 0.95622 0.95831 0.98691 1.20835 0.97333 0.94963 0.98943 1.21448 0.95564 1.01768 0.95109 1.18635 0.92476 0.91820 0.94721 1.21658 1.13654 1.06567 1.15620 0.93141 1.25767 0.99773 0.95263 0.97995 1.70012 1.37221 1.10948 1.37510 0.85619 0.79490 0.77265 0.79668 1.20103 1.20813 1.19370 1.21520 0.96515 0.98324 0.97399 1.20831 0.97392 0.94891 0.98736 0.86954 0.87881 0.92696 0.91601 0.95717 0.91942 0.98815 0.93061 0.93644 0.93198 0.89962 0.91705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.78 13.99 67.78 0.95 -4.83 15 2 C -0.12 -4.31 5.35 -16.13 -0.09 -4.39 15 3 C -0.08 -3.36 6.03 30.10 0.18 -3.17 15 4 C -0.10 -4.97 5.03 30.66 0.15 -4.82 15 5 C 0.04 2.17 2.01 -11.57 -0.02 2.15 15 6 C -0.54 -30.52 8.56 25.60 0.22 -30.31 15 7 H 0.05 2.82 7.74 -2.91 -0.02 2.80 15 8 C 0.01 0.58 5.29 84.65 0.45 1.03 15 9 N -0.92 -54.01 11.27 21.45 0.24 -53.77 15 10 Si 0.95 44.36 29.54 68.60 2.03 46.39 15 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 15 13 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 14 C -0.10 -4.26 5.15 30.66 0.16 -4.10 15 15 C -0.08 -2.85 6.03 30.11 0.18 -2.67 15 16 H 0.11 2.70 7.92 -2.91 -0.02 2.67 15 17 H 0.10 2.68 7.92 -2.91 -0.02 2.65 15 18 H 0.05 2.26 8.14 -2.38 -0.02 2.24 15 19 H 0.07 2.37 7.89 -2.39 -0.02 2.35 15 20 H 0.02 1.20 8.14 -2.39 -0.02 1.18 15 21 H 0.06 3.47 5.94 -2.39 -0.01 3.46 15 22 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 15 23 H 0.26 14.54 8.31 -92.71 -0.77 13.77 15 24 H 0.04 1.92 8.14 -2.38 -0.02 1.90 15 25 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 26 H 0.08 2.38 7.89 -2.39 -0.02 2.36 15 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 Total: -1.00 -60.13 222.04 5.56 -54.57 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: 1.11 Total: 3.92 kcal Atomic # 6 Polarization: -53.30 SS G_CDS: 2.18 Total: -51.11 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.24 Total: -53.77 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -60.13 5.56 -54.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075525064.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.254 kcal (2) G-P(sol) polarization free energy of solvation -60.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds