Wall clock time and date at job start Mon Mar 30 2020 01:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.36219 * 126.40306 * 274.69477 * 3 2 1 5 5 N 1.32758 * 108.61955 * 179.82847 * 4 3 2 6 6 C 1.32985 * 109.22400 * 0.43706 * 5 4 3 7 7 C 1.39996 * 125.96463 * 179.74696 * 6 5 4 8 8 H 1.07991 * 119.99776 * 174.22154 * 7 6 5 9 9 C 1.40240 * 119.99703 * 354.22907 * 7 6 5 10 10 N 1.30686 * 119.99861 * 6.04011 * 9 7 6 11 11 Si 1.86800 * 119.99610 * 186.04219 * 9 7 6 12 12 H 1.48503 * 109.47003 * 94.97879 * 11 9 7 13 13 H 1.48498 * 109.47177 * 214.97954 * 11 9 7 14 14 H 1.48497 * 109.47313 * 334.98265 * 11 9 7 15 15 N 1.36413 * 126.40061 * 94.99960 * 3 2 1 16 16 H 0.97002 * 126.56330 * 0.03804 * 15 3 2 17 17 H 1.08995 * 109.47131 * 59.99511 * 1 2 3 18 18 H 1.09002 * 109.46777 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.46555 * 299.99615 * 1 2 3 20 20 H 1.08995 * 109.47327 * 119.99728 * 2 1 3 21 21 H 1.08991 * 109.46714 * 240.00098 * 2 1 3 22 22 H 1.07999 * 125.69104 * 359.97438 * 4 3 2 23 23 H 0.97004 * 119.99431 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2172 2.2130 -1.0927 5 7 2.6663 3.3950 -0.6883 6 6 2.7868 3.3879 0.6361 7 6 3.2361 4.4525 1.4265 8 1 3.2083 4.3747 2.5033 9 6 3.7220 5.6198 0.8199 10 7 3.6466 5.7623 -0.4770 11 14 4.4771 6.9709 1.8658 12 1 5.9518 6.8009 1.9047 13 1 4.1466 8.2943 1.2788 14 1 3.9332 6.8914 3.2453 15 7 2.3924 2.1522 1.0938 16 1 2.3744 1.8571 2.0177 17 1 -0.3633 0.5139 -0.8899 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3632 0.5138 0.8901 20 1 1.8934 -0.5138 0.8900 21 1 1.8933 -0.5138 -0.8899 22 1 2.0276 1.9278 -2.1170 23 1 3.9831 6.5696 -0.8965 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082410901.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:45 Heat of formation + Delta-G solvation = 35.577409 kcal Electronic energy + Delta-G solvation = -9034.898962 eV Core-core repulsion = 7269.364603 eV Total energy + Delta-G solvation = -1765.534359 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.75717 -33.63130 -32.55557 -30.45445 -28.05410 -24.97887 -22.19207 -19.89146 -19.22883 -16.89076 -15.59118 -14.56705 -13.71000 -13.47532 -12.84318 -12.54902 -12.05513 -11.64373 -11.33849 -11.09622 -10.82580 -10.55719 -10.36840 -10.08233 -9.13882 -8.15120 -7.71876 -6.89365 -6.34610 -4.20498 3.08333 3.19004 3.22002 3.70774 4.07796 4.74778 4.89329 5.63617 5.71386 5.72766 5.98687 6.26957 6.42785 6.52754 6.58767 6.71055 7.19164 7.38000 7.75663 8.13452 8.32205 8.66281 9.04185 9.49074 10.30480 10.59216 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.117382 B = 0.012724 C = 0.011888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 238.480682 B = 2200.020750 C = 2354.778343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.023 4.023 3 C -0.149 4.149 4 C -0.010 4.010 5 N -0.516 5.516 6 C 0.373 3.627 7 C -0.468 4.468 8 H 0.076 0.924 9 C 0.082 3.918 10 N -0.744 5.744 11 Si 0.911 3.089 12 H -0.272 1.272 13 H -0.278 1.278 14 H -0.265 1.265 15 N -0.619 5.619 16 H 0.392 0.608 17 H 0.054 0.946 18 H 0.043 0.957 19 H 0.046 0.954 20 H 0.047 0.953 21 H 0.063 0.937 22 H 0.131 0.869 23 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 -4.704 2.744 5.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.062 4.062 3 C -0.261 4.261 4 C -0.164 4.164 5 N -0.238 5.238 6 C 0.128 3.872 7 C -0.508 4.508 8 H 0.095 0.905 9 C -0.141 4.141 10 N -0.369 5.369 11 Si 0.735 3.265 12 H -0.198 1.198 13 H -0.203 1.203 14 H -0.190 1.190 15 N -0.226 5.226 16 H 0.226 0.774 17 H 0.073 0.927 18 H 0.062 0.938 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.082 0.918 22 H 0.148 0.852 23 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.649 -3.935 1.930 4.683 hybrid contribution 0.122 -0.246 1.390 1.417 sum -1.528 -4.181 3.321 5.554 Atomic orbital electron populations 1.21794 0.96586 0.99788 1.01870 1.19541 0.94364 0.91687 1.00627 1.20468 1.20899 0.95978 0.88789 1.21953 1.05453 0.92759 0.96195 1.71261 1.25278 1.19135 1.08153 1.20188 0.94330 0.83328 0.89339 1.18091 1.42125 0.97575 0.93003 0.90537 1.25682 0.94837 0.98601 0.94985 1.70029 1.32131 1.24985 1.09766 0.86288 0.79669 0.79985 0.80510 1.19783 1.20324 1.18956 1.43250 1.58437 1.13831 1.07109 0.77450 0.92695 0.93830 0.93478 0.93467 0.91835 0.85170 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.90 37.16 0.37 -1.86 14 2 C -0.02 -0.41 6.49 -27.88 -0.18 -0.59 14 3 C -0.15 -3.43 6.51 -81.28 -0.53 -3.96 14 4 C -0.01 -0.26 11.77 -17.88 -0.21 -0.47 14 5 N -0.52 -15.45 9.43 -12.72 -0.12 -15.57 14 6 C 0.37 10.67 7.61 -155.59 -1.18 9.48 14 7 C -0.47 -13.06 9.45 -38.17 -0.36 -13.42 14 8 H 0.08 1.96 7.86 -52.49 -0.41 1.55 14 9 C 0.08 2.22 5.49 -17.29 -0.09 2.13 14 10 N -0.74 -21.34 11.92 55.56 0.66 -20.68 14 11 Si 0.91 19.57 29.57 -169.99 -5.03 14.54 14 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 14 13 H -0.28 -5.85 7.11 56.52 0.40 -5.45 14 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 14 15 N -0.62 -15.02 6.25 -8.20 -0.05 -15.07 14 16 H 0.39 8.16 8.96 -40.82 -0.37 7.80 14 17 H 0.05 0.88 8.14 -51.93 -0.42 0.46 14 18 H 0.04 0.56 8.14 -51.93 -0.42 0.13 14 19 H 0.05 0.76 8.14 -51.93 -0.42 0.34 14 20 H 0.05 0.76 8.14 -51.93 -0.42 0.34 14 21 H 0.06 1.03 8.14 -51.93 -0.42 0.61 14 22 H 0.13 3.02 8.06 -52.49 -0.42 2.60 14 23 H 0.27 7.05 8.29 -40.82 -0.34 6.71 14 LS Contribution 209.59 15.07 3.16 3.16 Total: -1.00 -31.73 209.59 -6.02 -37.75 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.45 Total: 4.58 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -2.19 Total: -8.70 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.49 Total: -51.33 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -31.73 -6.02 -37.75 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082410901.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.323 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds