Wall clock time and date at job start Mon Mar 30 2020 02:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 C 1.39871 * 126.03458 * 59.68981 * 12 2 1 14 14 N 1.30842 * 108.19866 * 179.82232 * 13 12 2 15 15 N 1.40079 * 108.20808 * 0.43758 * 14 13 12 16 16 H 0.97000 * 126.03862 * 179.74177 * 15 14 13 17 17 C 1.34955 * 107.92264 * 359.71887 * 15 14 13 18 18 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 20 20 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 21 21 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 22 22 H 1.07998 * 125.90375 * 359.97438 * 13 12 2 23 23 H 1.08002 * 126.12604 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 6 1.7686 -2.0391 1.5788 14 7 2.3777 -2.2940 2.7084 15 7 3.0410 -1.1310 3.1202 16 1 3.5706 -1.0313 3.9267 17 6 2.8136 -0.1739 2.1963 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.9026 -0.5282 -4.4376 22 1 1.1681 -2.7352 1.0120 23 1 3.1877 0.8389 2.2232 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084327386.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:23 Heat of formation + Delta-G solvation = 71.513572 kcal Electronic energy + Delta-G solvation = -9154.320028 eV Core-core repulsion = 7390.343977 eV Total energy + Delta-G solvation = -1763.976050 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.44061 -34.51302 -31.55894 -30.56081 -28.19981 -24.94130 -21.75228 -21.28682 -19.03937 -16.98823 -16.27673 -14.65829 -13.84682 -13.77333 -13.11920 -12.81788 -12.20899 -12.01568 -11.11528 -11.03091 -10.59097 -10.22913 -9.72083 -9.35179 -9.03407 -8.95857 -8.51090 -7.59596 -6.00852 -3.99252 2.54161 3.31867 3.41472 3.44308 3.51508 3.63273 4.46106 5.31324 5.55659 5.56330 6.23962 6.35399 6.39818 6.54649 6.77227 6.87390 7.09299 7.39425 7.58579 7.80163 7.89157 8.32188 8.62231 9.05319 9.61306 11.12507 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.078686 B = 0.015596 C = 0.014560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.760549 B = 1794.945257 C = 1922.580745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 H 0.030 0.970 4 C -0.504 4.504 5 H 0.074 0.926 6 C 0.067 3.933 7 N -0.903 5.903 8 Si 0.890 3.110 9 H -0.280 1.280 10 H -0.267 1.267 11 H -0.300 1.300 12 C -0.171 4.171 13 C 0.064 3.936 14 N -0.317 5.317 15 N -0.494 5.494 16 H 0.429 0.571 17 C 0.024 3.976 18 H 0.052 0.948 19 H 0.027 0.973 20 H 0.038 0.962 21 H 0.263 0.737 22 H 0.179 0.821 23 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.049 3.119 9.360 9.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.053 3.947 3 H 0.049 0.951 4 C -0.542 4.542 5 H 0.092 0.908 6 C -0.134 4.134 7 N -0.542 5.542 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.192 1.192 11 H -0.228 1.228 12 C -0.182 4.182 13 C -0.123 4.123 14 N -0.140 5.140 15 N -0.203 5.203 16 H 0.271 0.729 17 C -0.121 4.121 18 H 0.071 0.929 19 H 0.047 0.953 20 H 0.056 0.944 21 H 0.072 0.928 22 H 0.196 0.804 23 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.819 2.245 10.023 10.304 hybrid contribution -0.419 1.478 -0.549 1.631 sum -1.238 3.723 9.474 10.254 Atomic orbital electron populations 1.22121 0.98841 1.00710 0.98187 1.17663 0.91288 0.95302 0.90470 0.95149 1.21023 1.31549 1.13418 0.88185 0.90793 1.25020 0.95833 0.96660 0.95844 1.69904 1.45933 1.40471 0.97874 0.86822 0.80607 0.83840 0.76688 1.20685 1.19202 1.22761 1.20455 1.04074 0.94754 0.98909 1.23770 0.98667 0.96696 0.93131 1.77151 1.14419 1.06075 1.16371 1.46092 1.43933 1.08867 1.21429 0.72888 1.22294 1.02411 0.95532 0.91858 0.92901 0.95350 0.94373 0.92758 0.80390 0.81603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.56 37.16 0.32 -2.73 14 2 C 0.07 1.70 2.25 -92.92 -0.21 1.49 14 3 H 0.03 0.71 7.16 -51.93 -0.37 0.34 14 4 C -0.50 -14.05 9.00 -34.44 -0.31 -14.36 14 5 H 0.07 2.27 7.98 -52.49 -0.42 1.85 14 6 C 0.07 1.93 5.45 -17.82 -0.10 1.83 14 7 N -0.90 -27.65 13.96 55.43 0.77 -26.88 14 8 Si 0.89 21.82 24.37 -169.99 -4.14 17.68 14 9 H -0.28 -6.70 6.87 56.52 0.39 -6.31 14 10 H -0.27 -6.21 6.53 56.52 0.37 -5.84 14 11 H -0.30 -7.40 7.11 56.52 0.40 -7.00 14 12 C -0.17 -3.57 4.74 -105.06 -0.50 -4.07 14 13 C 0.06 1.29 11.52 -17.36 -0.20 1.09 14 14 N -0.32 -6.07 12.70 30.63 0.39 -5.68 14 15 N -0.49 -7.95 7.36 30.45 0.22 -7.72 14 16 H 0.43 5.06 8.96 -182.61 -1.64 3.43 14 17 C 0.02 0.42 11.88 -17.22 -0.20 0.21 14 18 H 0.05 1.10 8.02 -51.93 -0.42 0.69 14 19 H 0.03 0.53 8.14 -51.93 -0.42 0.11 14 20 H 0.04 0.85 3.27 -51.93 -0.17 0.68 14 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 14 22 H 0.18 3.42 8.06 -52.49 -0.42 3.00 14 23 H 0.17 2.33 8.06 -52.49 -0.42 1.90 14 LS Contribution 200.26 15.07 3.02 3.02 Total: -1.00 -31.66 200.26 -4.40 -36.06 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -3.46 Total: 0.05 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: -1.20 Total: -16.53 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 1.39 Total: -40.28 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -31.66 -4.40 -36.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327386.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.575 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds