Wall clock time and date at job start Mon Mar 30 2020 02:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50699 * 109.47592 * 120.00047 * 2 1 3 13 13 C 1.39871 * 126.03458 * 59.68981 * 12 2 1 14 14 N 1.30842 * 108.19866 * 179.82232 * 13 12 2 15 15 N 1.40079 * 108.20808 * 0.43758 * 14 13 12 16 16 H 0.97000 * 126.03862 * 179.74177 * 15 14 13 17 17 C 1.34955 * 107.92264 * 359.71887 * 15 14 13 18 18 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 19 19 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 20 20 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 21 21 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 22 22 H 1.07998 * 125.90375 * 359.97438 * 13 12 2 23 23 H 1.08002 * 126.12604 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 6 2.0324 -0.7104 1.2304 13 6 1.7686 -2.0391 1.5788 14 7 2.3777 -2.2940 2.7084 15 7 3.0410 -1.1310 3.1202 16 1 3.5706 -1.0313 3.9267 17 6 2.8136 -0.1739 2.1963 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 1.9026 -0.5282 -4.4376 22 1 1.1681 -2.7352 1.0120 23 1 3.1877 0.8389 2.2232 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084327386.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:23 Heat of formation + Delta-G solvation = 48.380202 kcal Electronic energy + Delta-G solvation = -9155.323166 eV Core-core repulsion = 7390.343977 eV Total energy + Delta-G solvation = -1764.979189 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.89974 -36.36610 -33.59399 -32.03238 -29.76532 -26.96332 -23.49200 -22.77793 -20.57825 -18.79450 -18.07816 -16.56307 -15.37011 -15.28592 -14.82022 -14.77938 -14.00728 -13.56363 -12.88703 -12.87519 -12.32947 -12.05300 -11.50227 -11.16718 -10.97854 -10.65798 -10.38769 -9.12889 -8.19922 -6.22918 1.11642 1.39933 1.44214 1.55620 2.06997 2.24935 2.41606 3.16332 4.03245 4.27997 4.61928 4.71455 4.88117 4.96972 5.06217 5.26256 5.34966 5.74001 5.80480 5.89672 6.44377 6.63348 6.83191 6.91394 7.41674 8.97305 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.078686 B = 0.015596 C = 0.014560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.760549 B = 1794.945257 C = 1922.580745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.076 3.924 3 H 0.038 0.962 4 C -0.503 4.503 5 H 0.026 0.974 6 C 0.006 3.994 7 N -0.957 5.957 8 Si 0.955 3.045 9 H -0.270 1.270 10 H -0.239 1.239 11 H -0.304 1.304 12 C -0.215 4.215 13 C 0.047 3.953 14 N -0.332 5.332 15 N -0.472 5.472 16 H 0.451 0.549 17 C 0.052 3.948 18 H 0.047 0.953 19 H 0.059 0.941 20 H 0.030 0.970 21 H 0.263 0.737 22 H 0.173 0.827 23 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 5.043 11.187 12.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.056 3.944 3 H 0.056 0.944 4 C -0.542 4.542 5 H 0.045 0.955 6 C -0.190 4.190 7 N -0.598 5.598 8 Si 0.782 3.218 9 H -0.196 1.196 10 H -0.163 1.163 11 H -0.233 1.233 12 C -0.226 4.226 13 C -0.138 4.138 14 N -0.156 5.156 15 N -0.183 5.183 16 H 0.297 0.703 17 C -0.095 4.095 18 H 0.067 0.933 19 H 0.078 0.922 20 H 0.049 0.951 21 H 0.072 0.928 22 H 0.190 0.810 23 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.243 4.154 11.910 12.675 hybrid contribution -0.174 0.804 -1.029 1.317 sum -1.416 4.958 10.882 12.042 Atomic orbital electron populations 1.22048 0.97403 1.00919 0.99244 1.17522 0.92469 0.95032 0.89342 0.94438 1.21314 1.30262 1.12029 0.90559 0.95515 1.25925 0.97482 1.00208 0.95337 1.70075 1.48262 1.42866 0.98578 0.85760 0.78838 0.79963 0.77237 1.19597 1.16291 1.23278 1.20380 1.07149 0.95352 0.99748 1.23779 0.99364 0.96910 0.93729 1.77104 1.14975 1.07429 1.16114 1.46123 1.42712 1.07719 1.21783 0.70304 1.22769 0.99663 0.96845 0.90247 0.93335 0.92180 0.95137 0.92796 0.80973 0.77588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 8.56 71.98 0.62 -5.04 14 2 C 0.08 3.43 2.25 -12.29 -0.03 3.40 14 3 H 0.04 1.63 7.16 -2.39 -0.02 1.61 14 4 C -0.50 -28.48 9.00 25.60 0.23 -28.25 14 5 H 0.03 1.71 7.98 -2.91 -0.02 1.69 14 6 C 0.01 0.36 5.45 84.66 0.46 0.82 14 7 N -0.96 -60.27 13.96 21.45 0.30 -59.97 14 8 Si 0.95 44.30 24.37 68.60 1.67 45.97 14 9 H -0.27 -11.99 6.87 99.48 0.68 -11.31 14 10 H -0.24 -9.97 6.53 99.48 0.65 -9.32 14 11 H -0.30 -14.25 7.11 99.48 0.71 -13.54 14 12 C -0.22 -8.59 4.74 -20.15 -0.10 -8.69 14 13 C 0.05 1.90 11.52 85.24 0.98 2.88 14 14 N -0.33 -12.19 12.70 -57.02 -0.72 -12.91 14 15 N -0.47 -13.62 7.36 -57.59 -0.42 -14.04 14 16 H 0.45 8.84 8.96 -213.33 -1.91 6.93 14 17 C 0.05 1.61 11.88 83.54 0.99 2.60 14 18 H 0.05 1.97 8.02 -2.39 -0.02 1.95 14 19 H 0.06 2.05 8.14 -2.39 -0.02 2.03 14 20 H 0.03 1.27 3.27 -2.39 -0.01 1.26 14 21 H 0.26 15.56 8.31 -92.70 -0.77 14.79 14 22 H 0.17 6.82 8.06 -2.91 -0.02 6.80 14 23 H 0.21 4.64 8.06 -2.91 -0.02 4.62 14 Total: -1.00 -68.93 200.26 3.21 -65.72 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -0.78 Total: 7.50 kcal Atomic # 6 Polarization: -35.42 SS G_CDS: 3.16 Total: -32.26 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -0.85 Total: -86.93 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.67 Total: 45.97 kcal Total: -68.93 3.21 -65.72 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084327386.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.100 kcal (2) G-P(sol) polarization free energy of solvation -68.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds