Wall clock time and date at job start Mon Mar 30 2020 02:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00099 * 2 1 4 4 H 1.48493 * 109.47407 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46962 * 240.00013 * 3 2 1 6 6 H 1.48502 * 109.47288 * 120.00166 * 3 2 1 7 7 C 1.37882 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00073 * 344.30760 * 7 2 1 9 9 C 1.50700 * 119.99822 * 164.30932 * 7 2 1 10 10 H 1.08993 * 109.47197 * 54.85863 * 9 7 2 11 11 N 1.46902 * 109.46933 * 294.85826 * 9 7 2 12 12 C 1.50700 * 109.47045 * 174.86133 * 9 7 2 13 13 C 1.41381 * 126.57934 * 259.71077 * 12 9 7 14 14 C 1.34520 * 106.84082 * 179.83305 * 13 12 9 15 15 O 1.34309 * 108.41803 * 0.43247 * 14 13 12 16 16 C 1.34301 * 109.47873 * 359.71822 * 15 14 13 17 17 H 0.97000 * 120.00472 * 174.83586 * 1 2 3 18 18 H 1.00900 * 110.99971 * 294.05532 * 11 9 7 19 19 H 1.00901 * 110.99937 * 58.01173 * 11 9 7 20 20 H 1.07992 * 126.57897 * 0.02562 * 13 12 9 21 21 H 1.07999 * 125.78894 * 180.11377 * 14 13 12 22 22 H 1.08003 * 125.79335 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1029 1.6963 -1.2126 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 1.4946 -2.1119 0.2539 9 6 3.4693 -1.2186 -0.3524 10 1 4.0098 -0.5246 0.2912 11 7 3.6416 -0.8203 -1.7559 12 6 4.0102 -2.6114 -0.1556 13 6 4.7550 -3.0772 0.9522 14 6 5.0292 -4.3736 0.7201 15 8 4.5013 -4.7130 -0.4674 16 6 3.8821 -3.6483 -1.0029 17 1 -0.4851 -0.8366 -0.0756 18 1 3.2319 -1.5010 -2.3778 19 1 3.2571 0.0979 -1.9209 20 1 5.0450 -2.5034 1.8199 21 1 5.5846 -5.0287 1.3748 22 1 3.3688 -3.6279 -1.9529 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095672585.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:38 Heat of formation + Delta-G solvation = -13.826196 kcal Electronic energy + Delta-G solvation = -9264.762614 eV Core-core repulsion = 7399.367291 eV Total energy + Delta-G solvation = -1865.395323 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.069 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -43.30008 -37.21581 -34.27150 -32.84551 -29.98309 -27.89618 -24.25668 -22.35173 -20.75550 -19.76151 -18.47326 -16.76453 -16.56731 -15.54312 -15.40755 -14.92004 -14.53380 -14.13813 -13.59513 -12.87928 -12.78365 -12.06600 -11.89512 -11.41177 -10.71097 -10.56660 -9.53390 -9.35529 -8.67814 -6.51320 0.99286 1.43244 1.49297 1.70760 1.87293 2.37591 2.41153 2.96257 4.02352 4.19273 4.21698 4.42512 4.82825 4.99853 5.26377 5.46859 5.66773 5.76948 5.91974 6.28593 6.37457 6.53409 6.79440 7.29265 8.52053 Molecular weight = 167.07amu Principal moments of inertia in cm(-1) A = 0.076027 B = 0.015369 C = 0.014866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.201772 B = 1821.416841 C = 1883.060951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.016 4.016 3 Si 1.088 2.912 4 H -0.287 1.287 5 H -0.237 1.237 6 H -0.270 1.270 7 C -0.627 4.627 8 H 0.012 0.988 9 C 0.243 3.757 10 H 0.039 0.961 11 N -0.844 5.844 12 C -0.157 4.157 13 C -0.238 4.238 14 C -0.038 4.038 15 O -0.189 6.189 16 C -0.065 4.065 17 H 0.253 0.747 18 H 0.329 0.671 19 H 0.331 0.669 20 H 0.151 0.849 21 H 0.246 0.754 22 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.767 -4.113 -0.611 10.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.215 4.215 3 Si 0.908 3.092 4 H -0.213 1.213 5 H -0.162 1.162 6 H -0.195 1.195 7 C -0.666 4.666 8 H 0.030 0.970 9 C 0.132 3.868 10 H 0.057 0.943 11 N -0.374 5.374 12 C -0.159 4.159 13 C -0.258 4.258 14 C -0.105 4.105 15 O -0.086 6.086 16 C -0.132 4.132 17 H 0.062 0.938 18 H 0.140 0.860 19 H 0.145 0.855 20 H 0.169 0.831 21 H 0.262 0.738 22 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 10.373 -2.819 -0.529 10.763 hybrid contribution -1.602 -1.615 0.265 2.290 sum 8.771 -4.434 -0.264 9.832 Atomic orbital electron populations 1.70955 1.08293 1.29670 1.47601 1.27321 0.96130 1.06290 0.91796 0.83482 0.74663 0.71503 0.79524 1.21281 1.16172 1.19507 1.22821 0.96506 0.94785 1.52488 0.96970 1.17542 0.91932 0.89295 0.87986 0.94346 1.59756 1.64967 1.07084 1.05627 1.20739 1.01286 0.97629 0.96224 1.22008 1.05410 0.97026 1.01325 1.24682 1.02119 0.96544 0.87125 1.83989 1.56255 1.37337 1.30999 1.23765 1.03467 0.84536 1.01387 0.93799 0.85961 0.85468 0.83077 0.73803 0.77749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.67 13.69 21.45 0.29 -57.38 14 2 C -0.02 -0.91 5.38 84.66 0.46 -0.46 14 3 Si 1.09 48.80 26.42 68.60 1.81 50.61 14 4 H -0.29 -12.97 7.11 99.48 0.71 -12.26 14 5 H -0.24 -9.28 5.70 99.48 0.57 -8.71 14 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 14 7 C -0.63 -35.76 9.05 25.60 0.23 -35.52 14 8 H 0.01 0.77 7.99 -2.91 -0.02 0.75 14 9 C 0.24 11.69 2.73 43.42 0.12 11.81 14 10 H 0.04 1.88 6.86 -2.39 -0.02 1.87 14 11 N -0.84 -36.39 9.19 -174.96 -1.61 -38.00 14 12 C -0.16 -6.86 5.11 -19.94 -0.10 -6.96 14 13 C -0.24 -8.88 10.87 22.19 0.24 -8.63 14 14 C -0.04 -1.15 12.09 66.97 0.81 -0.34 14 15 O -0.19 -6.61 10.65 -2.52 -0.03 -6.63 14 16 C -0.06 -2.52 11.41 66.97 0.76 -1.76 14 17 H 0.25 16.02 8.73 -92.71 -0.81 15.21 14 18 H 0.33 13.41 7.95 -89.69 -0.71 12.69 14 19 H 0.33 14.20 5.50 -89.69 -0.49 13.71 14 20 H 0.15 5.11 8.06 -2.91 -0.02 5.09 14 21 H 0.25 4.54 8.06 -2.91 -0.02 4.52 14 22 H 0.21 7.13 7.50 -2.91 -0.02 7.11 14 Total: -1.00 -66.98 197.13 2.85 -64.13 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.14 Total: 29.14 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 2.52 Total: -41.87 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -1.31 Total: -95.38 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.03 Total: -6.63 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.81 Total: 50.61 kcal Total: -66.98 2.85 -64.13 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095672585.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.306 kcal (2) G-P(sol) polarization free energy of solvation -66.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds