Wall clock time and date at job start Mon Mar 30 2020 01:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30791 * 1 3 3 Si 1.86804 * 119.99793 * 2 1 4 4 H 1.48492 * 109.47256 * 274.98475 * 3 2 1 5 5 H 1.48501 * 109.46964 * 34.98519 * 3 2 1 6 6 H 1.48494 * 109.47032 * 154.98015 * 3 2 1 7 7 C 1.39999 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99960 * 186.27622 * 7 2 1 9 9 C 1.41072 * 120.00231 * 6.27771 * 7 2 1 10 10 C 1.40861 * 120.11362 * 173.69973 * 9 7 2 11 11 N 1.31695 * 119.86019 * 179.97438 * 10 9 7 12 12 C 1.33030 * 120.10060 * 0.02562 * 11 10 9 13 13 N 1.38311 * 119.88870 * 179.97438 * 12 11 10 14 14 C 1.40050 * 120.22899 * 0.27589 * 12 11 10 15 15 N 1.31459 * 120.13359 * 359.42861 * 14 12 11 16 16 H 0.97001 * 120.00324 * 0.02562 * 1 2 3 17 17 H 1.08000 * 120.06596 * 359.96152 * 10 9 7 18 18 H 0.97002 * 119.99538 * 0.02562 * 13 12 11 19 19 H 0.97000 * 120.00130 * 179.73170 * 13 12 11 20 20 H 1.08000 * 119.93195 * 179.70124 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3840 2.1073 -1.3947 5 1 1.4959 2.6200 0.8028 6 1 3.5880 1.4122 0.5921 7 6 2.0079 -1.2124 0.0005 8 1 3.0831 -1.2151 0.1028 9 6 1.3090 -2.4306 -0.1325 10 6 2.0172 -3.6409 -0.2656 11 7 1.3597 -4.7752 -0.3890 12 6 0.0294 -4.7787 -0.3885 13 7 -0.6567 -5.9725 -0.5189 14 6 -0.6788 -3.5770 -0.2628 15 7 -0.0317 -2.4401 -0.1332 16 1 -0.4851 0.8400 -0.0004 17 1 3.0972 -3.6385 -0.2666 18 1 -0.1679 -6.8054 -0.6101 19 1 -1.6267 -5.9774 -0.5148 20 1 -1.7588 -3.5849 -0.2678 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095761086.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:23 Heat of formation + Delta-G solvation = 19.702179 kcal Electronic energy + Delta-G solvation = -8750.981251 eV Core-core repulsion = 6946.644058 eV Total energy + Delta-G solvation = -1804.337193 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 165.060 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.82082 -36.33108 -34.64613 -33.76490 -30.88385 -26.92083 -24.76917 -23.31175 -19.51501 -18.31736 -17.75392 -16.97668 -15.80409 -15.71307 -15.10243 -14.57173 -13.90472 -13.14065 -13.02928 -12.47590 -12.07216 -11.93247 -11.44701 -10.99972 -10.86041 -9.33885 -8.79156 -8.28669 -6.26896 0.70490 1.16047 1.44455 1.57905 1.59274 2.26550 2.87999 3.13691 3.87613 4.12927 4.26744 4.51553 5.07006 5.09934 5.29665 5.61234 6.19880 6.53919 6.76969 6.82347 7.04500 7.63587 7.98682 8.47579 Molecular weight = 165.06amu Principal moments of inertia in cm(-1) A = 0.117590 B = 0.014567 C = 0.013035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 238.059083 B = 1921.647742 C = 2147.623351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.022 3.978 3 Si 0.991 3.009 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.463 4.463 8 H 0.096 0.904 9 C 0.143 3.857 10 C -0.043 4.043 11 N -0.498 5.498 12 C 0.209 3.791 13 N -0.850 5.850 14 C 0.013 3.987 15 N -0.452 5.452 16 H 0.279 0.721 17 H 0.151 0.849 18 H 0.397 0.603 19 H 0.410 0.590 20 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 -1.640 -0.444 1.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.176 1.176 7 C -0.497 4.497 8 H 0.114 0.886 9 C 0.015 3.985 10 C -0.207 4.207 11 N -0.220 5.220 12 C -0.029 4.029 13 N -0.401 5.401 14 C -0.159 4.159 15 N -0.170 5.170 16 H 0.089 0.911 17 H 0.168 0.832 18 H 0.225 0.775 19 H 0.241 0.759 20 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.507 -1.405 -0.420 1.552 hybrid contribution -0.009 0.204 -0.047 0.210 sum -0.516 -1.201 -0.468 1.388 Atomic orbital electron populations 1.70207 1.08972 1.29189 1.30996 1.26991 0.95716 1.04626 0.92480 0.85067 0.79133 0.75583 0.79130 1.19033 1.19481 1.17559 1.19752 0.95428 0.89988 1.44499 0.88606 1.19687 0.89401 0.94712 0.94704 1.23155 0.99733 0.88061 1.09797 1.67325 1.07617 1.30792 1.16220 1.19177 0.89372 0.88971 1.05377 1.41250 1.08128 1.04146 1.86579 1.23494 1.00849 0.88513 1.02996 1.69339 1.08833 1.25335 1.13467 0.91056 0.83180 0.77473 0.75910 0.82918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -42.01 11.50 21.83 0.25 -41.76 14 2 C 0.02 1.13 5.49 85.27 0.47 1.60 14 3 Si 0.99 38.16 29.57 68.60 2.03 40.18 14 4 H -0.27 -9.93 7.11 99.48 0.71 -9.22 14 5 H -0.27 -9.98 7.11 99.48 0.71 -9.28 14 6 H -0.25 -9.24 7.11 99.48 0.71 -8.53 14 7 C -0.46 -25.20 9.13 23.39 0.21 -24.99 14 8 H 0.10 4.78 7.85 -2.91 -0.02 4.76 14 9 C 0.14 8.08 6.54 40.14 0.26 8.34 14 10 C -0.04 -2.19 10.98 85.36 0.94 -1.26 14 11 N -0.50 -24.50 10.51 -190.55 -2.00 -26.51 14 12 C 0.21 9.44 7.77 133.33 1.04 10.48 14 13 N -0.85 -28.07 9.04 -54.94 -0.50 -28.57 14 14 C 0.01 0.65 11.08 85.19 0.94 1.60 14 15 N -0.45 -25.64 8.04 -187.83 -1.51 -27.15 14 16 H 0.28 13.72 8.30 -92.71 -0.77 12.95 14 17 H 0.15 6.98 8.06 -2.91 -0.02 6.95 14 18 H 0.40 11.77 8.95 -92.71 -0.83 10.94 14 19 H 0.41 10.73 8.82 -92.71 -0.82 9.91 14 20 H 0.15 6.32 8.06 -2.91 -0.02 6.30 14 Total: -1.00 -65.02 191.00 1.76 -63.25 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -0.37 Total: 24.79 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 3.86 Total: -4.24 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -3.76 Total: -123.99 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.18 kcal Total: -65.02 1.76 -63.25 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095761086.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.955 kcal (2) G-P(sol) polarization free energy of solvation -65.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds