Wall clock time and date at job start Mon Mar 30 2020 01:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33022 * 126.27207 * 2 1 4 4 C 1.31007 * 109.98468 * 180.27635 * 3 2 1 5 5 N 1.35078 * 109.64385 * 359.71962 * 4 3 2 6 6 C 1.46503 * 126.48571 * 180.02562 * 5 4 3 7 7 C 1.38432 * 107.02959 * 359.97438 * 5 4 3 8 8 C 1.40070 * 127.06037 * 179.97438 * 7 5 4 9 9 H 1.07997 * 119.99707 * 145.81479 * 8 7 5 10 10 C 1.40069 * 119.99903 * 325.81188 * 8 7 5 11 11 N 1.30850 * 120.00282 * 335.35736 * 10 8 7 12 12 Si 1.86807 * 119.99909 * 155.35526 * 10 8 7 13 13 H 1.48504 * 109.46857 * 270.00370 * 12 10 8 14 14 H 1.48501 * 109.46622 * 29.99965 * 12 10 8 15 15 H 1.48496 * 109.47181 * 150.00173 * 12 10 8 16 16 H 1.09009 * 109.47166 * 270.07938 * 1 2 3 17 17 H 1.08999 * 109.47304 * 30.07698 * 1 2 3 18 18 H 1.08994 * 109.47441 * 150.08176 * 1 2 3 19 19 H 1.07996 * 125.18381 * 179.74019 * 4 3 2 20 20 H 1.09004 * 109.46486 * 269.97067 * 6 5 4 21 21 H 1.08999 * 109.47154 * 29.97215 * 6 5 4 22 22 H 1.08994 * 109.47298 * 149.97259 * 6 5 4 23 23 H 0.97000 * 120.00005 * 354.25475 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2939 1.0724 0.0000 4 6 3.5514 0.7050 -0.0059 5 7 3.6305 -0.6434 -0.0039 6 6 4.8574 -1.4441 -0.0083 7 6 2.3329 -1.1256 0.0044 8 6 1.9311 -2.4674 0.0087 9 1 1.0381 -2.7619 0.5399 10 6 2.6874 -3.4272 -0.6759 11 7 3.4463 -3.0681 -1.6795 12 14 2.6125 -5.2200 -0.1563 13 1 3.6593 -5.4838 0.8636 14 1 1.2754 -5.5130 0.4195 15 1 2.8435 -6.0882 -1.3386 16 1 -0.3634 0.0014 1.0277 17 1 -0.3634 0.8893 -0.5150 18 1 -0.3634 -0.8906 -0.5125 19 1 4.3962 1.3778 -0.0113 20 1 5.1564 -1.6449 -1.0371 21 1 5.6507 -0.8962 0.5003 22 1 4.6779 -2.3868 0.5085 23 1 3.4224 -2.1539 -2.0029 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104400734.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:53 Heat of formation + Delta-G solvation = 18.475847 kcal Electronic energy + Delta-G solvation = -9414.831630 eV Core-core repulsion = 7648.555692 eV Total energy + Delta-G solvation = -1766.275939 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.07772 -36.05296 -34.37794 -31.57239 -29.47188 -26.84912 -25.74412 -21.99709 -20.64856 -19.20025 -17.13450 -16.25684 -15.77606 -15.39613 -14.77215 -14.15298 -13.88484 -13.55549 -13.14548 -12.95230 -12.78020 -12.60142 -11.98790 -11.75007 -11.02635 -10.40795 -9.98622 -9.29377 -8.83028 -6.39278 1.33539 1.54391 1.81690 1.82557 2.36140 2.42944 2.48585 3.06618 4.11673 4.15735 4.49093 4.55312 4.73189 4.81453 4.98174 5.08040 5.34912 5.55847 5.69405 6.03507 6.12018 6.60031 6.87992 7.09213 7.71030 8.09118 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.057859 B = 0.020961 C = 0.016638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.821535 B = 1335.517836 C = 1682.540776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 C -0.182 4.182 3 N -0.506 5.506 4 C 0.074 3.926 5 N -0.489 5.489 6 C 0.097 3.903 7 C 0.154 3.846 8 C -0.553 4.553 9 H 0.078 0.922 10 C 0.006 3.994 11 N -0.830 5.830 12 Si 1.120 2.880 13 H -0.261 1.261 14 H -0.266 1.266 15 H -0.276 1.276 16 H 0.047 0.953 17 H 0.053 0.947 18 H 0.051 0.949 19 H 0.212 0.788 20 H 0.063 0.937 21 H 0.098 0.902 22 H 0.064 0.936 23 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.424 -2.548 2.537 4.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.310 4.310 3 N -0.225 5.225 4 C -0.202 4.202 5 N -0.179 5.179 6 C -0.045 4.045 7 C 0.040 3.960 8 C -0.588 4.588 9 H 0.096 0.904 10 C -0.207 4.207 11 N -0.456 5.456 12 Si 0.938 3.062 13 H -0.186 1.186 14 H -0.190 1.190 15 H -0.201 1.201 16 H 0.066 0.934 17 H 0.072 0.928 18 H 0.070 0.930 19 H 0.228 0.772 20 H 0.081 0.919 21 H 0.116 0.884 22 H 0.082 0.918 23 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.939 -3.193 2.200 4.865 hybrid contribution -0.259 1.045 0.104 1.081 sum 2.680 -2.148 2.304 4.136 Atomic orbital electron populations 1.19466 0.88055 1.00413 1.00032 1.21389 0.96392 0.88477 1.24769 1.69233 1.01685 1.32510 1.19110 1.24577 0.96453 0.82838 1.16328 1.45549 1.06700 1.07252 1.58417 1.21891 0.84395 0.95693 1.02567 1.19121 0.82596 0.95045 0.99243 1.19539 1.13685 0.90921 1.34637 0.90382 1.28226 0.90636 1.10412 0.91472 1.70654 1.34628 1.21539 1.18794 0.82937 0.78364 0.68118 0.76800 1.18603 1.19049 1.20065 0.93394 0.92824 0.92965 0.77155 0.91900 0.88371 0.91759 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -1.00 10.26 71.23 0.73 -0.27 14 2 C -0.18 -9.91 7.25 42.71 0.31 -9.60 14 3 N -0.51 -26.73 11.18 -185.06 -2.07 -28.80 14 4 C 0.07 3.48 12.52 180.10 2.25 5.73 14 5 N -0.49 -24.00 2.88 -543.11 -1.57 -25.56 14 6 C 0.10 3.96 9.14 127.77 1.17 5.13 14 7 C 0.15 8.47 5.74 38.88 0.22 8.69 14 8 C -0.55 -29.78 8.78 23.16 0.20 -29.58 14 9 H 0.08 4.19 7.96 -2.91 -0.02 4.16 14 10 C 0.01 0.30 3.98 85.28 0.34 0.64 14 11 N -0.83 -43.13 11.45 21.86 0.25 -42.88 14 12 Si 1.12 42.20 30.00 68.60 2.06 44.26 14 13 H -0.26 -9.11 7.11 99.48 0.71 -8.40 14 14 H -0.27 -9.50 7.11 99.48 0.71 -8.80 14 15 H -0.28 -10.20 7.11 99.48 0.71 -9.49 14 16 H 0.05 2.04 8.14 -2.38 -0.02 2.02 14 17 H 0.05 2.28 8.14 -2.39 -0.02 2.26 14 18 H 0.05 2.36 7.99 -2.39 -0.02 2.34 14 19 H 0.21 7.84 8.06 -2.91 -0.02 7.81 14 20 H 0.06 2.63 6.78 -2.38 -0.02 2.62 14 21 H 0.10 3.12 8.14 -2.39 -0.02 3.10 14 22 H 0.06 2.75 7.00 -2.39 -0.02 2.74 14 23 H 0.27 14.97 6.72 -92.71 -0.62 14.35 14 Total: -1.00 -62.81 203.43 5.24 -57.56 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.34 Total: 14.70 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 5.23 Total: -19.27 kcal Atomic # 7 Polarization: -93.86 SS G_CDS: -3.38 Total: -97.25 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.06 Total: 44.26 kcal Total: -62.81 5.24 -57.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104400734.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.037 kcal (2) G-P(sol) polarization free energy of solvation -62.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds