Wall clock time and date at job start Mon Mar 30 2020 01:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48499 * 109.46910 * 269.99479 * 3 2 1 5 5 H 1.48498 * 109.47251 * 29.99725 * 3 2 1 6 6 H 1.48500 * 109.47011 * 149.99874 * 3 2 1 7 7 C 1.37881 * 119.99459 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00358 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99598 * 180.02562 * 7 2 1 10 10 C 1.53298 * 116.10046 * 298.98450 * 9 7 2 11 11 C 1.31889 * 108.28623 * 199.31387 * 10 9 7 12 12 C 1.53498 * 107.87742 * 359.87751 * 11 10 9 13 13 H 1.09001 * 116.74188 * 162.36419 * 12 11 10 14 14 C 1.56911 * 103.13747 * 292.13655 * 12 11 10 15 15 N 1.48466 * 104.11856 * 67.00156 * 14 12 11 16 16 C 1.57031 * 99.99103 * 34.12883 * 12 11 10 17 17 H 0.96999 * 119.99882 * 0.02562 * 1 2 3 18 18 H 1.07998 * 125.85676 * 19.31959 * 10 9 7 19 19 H 1.08002 * 126.05852 * 179.60667 * 11 10 9 20 20 H 1.09006 * 110.59386 * 308.30931 * 14 12 11 21 21 H 1.09002 * 110.44693 * 185.62082 * 14 12 11 22 22 H 1.00900 * 111.00284 * 119.68400 * 15 14 12 23 23 H 1.08998 * 112.75980 * 193.71676 * 16 12 11 24 24 H 1.09005 * 112.48764 * 65.51004 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 6 4.1863 -0.5274 -1.2030 11 6 5.4297 -0.9616 -1.2734 12 6 5.6526 -1.9426 -0.1140 13 1 6.5117 -2.6087 -0.1934 14 6 5.5816 -1.0194 1.1529 15 7 4.1684 -0.5661 1.1918 16 6 4.2262 -2.5939 -0.0302 17 1 -0.4850 0.8400 -0.0004 18 1 3.7232 0.1772 -1.8778 19 1 6.1601 -0.6805 -2.0177 20 1 6.2528 -0.1674 1.0446 21 1 5.8253 -1.5864 2.0513 22 1 3.7190 -0.8560 2.0475 23 1 4.0759 -3.1632 0.8871 24 1 3.9790 -3.1722 -0.9205 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104612933.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:58 Heat of formation + Delta-G solvation = 56.075595 kcal Electronic energy + Delta-G solvation = -9492.023287 eV Core-core repulsion = 7792.803707 eV Total energy + Delta-G solvation = -1699.219580 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 165.085 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.74025 -32.55304 -30.97502 -28.86674 -27.27679 -24.26240 -21.25023 -19.48392 -17.87006 -16.64189 -15.20061 -14.48999 -13.83917 -13.44826 -12.68921 -12.53558 -11.72513 -11.24959 -10.84720 -10.62853 -10.51747 -9.98207 -9.76660 -9.67229 -9.39138 -8.56563 -8.18168 -7.25235 -6.09697 -4.19309 3.04573 3.46967 3.58820 3.89724 4.62503 5.05046 5.28639 5.37446 5.46092 5.70343 5.97461 5.98222 6.14706 6.29278 6.53095 6.66030 6.69129 6.86390 7.14864 7.52284 7.72483 7.84498 8.20048 8.67360 8.90026 9.54495 10.99678 Molecular weight = 165.08amu Principal moments of inertia in cm(-1) A = 0.066183 B = 0.023125 C = 0.021222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.968833 B = 1210.528622 C = 1319.088451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.087 3.913 3 Si 0.855 3.145 4 H -0.290 1.290 5 H -0.302 1.302 6 H -0.192 1.192 7 C -0.507 4.507 8 H 0.077 0.923 9 C 0.224 3.776 10 C -0.122 4.122 11 C -0.209 4.209 12 C -0.098 4.098 13 H 0.090 0.910 14 C 0.042 3.958 15 N -0.673 5.673 16 C -0.141 4.141 17 H 0.265 0.735 18 H 0.113 0.887 19 H 0.112 0.888 20 H 0.062 0.938 21 H 0.040 0.960 22 H 0.330 0.670 23 H 0.061 0.939 24 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.634 -1.410 0.448 9.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.118 4.118 3 Si 0.682 3.318 4 H -0.217 1.217 5 H -0.230 1.230 6 H -0.113 1.113 7 C -0.545 4.545 8 H 0.095 0.905 9 C 0.136 3.864 10 C -0.141 4.141 11 C -0.228 4.228 12 C -0.117 4.117 13 H 0.108 0.892 14 C -0.089 4.089 15 N -0.303 5.303 16 C -0.180 4.180 17 H 0.075 0.925 18 H 0.131 0.869 19 H 0.130 0.870 20 H 0.081 0.919 21 H 0.059 0.941 22 H 0.146 0.854 23 H 0.079 0.921 24 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.571 -0.617 0.215 9.593 hybrid contribution 0.233 0.039 0.056 0.243 sum 9.804 -0.578 0.271 9.825 Atomic orbital electron populations 1.69924 1.06831 1.27560 1.48666 1.24979 0.94553 0.99853 0.92388 0.87293 0.84424 0.81511 0.78601 1.21695 1.23004 1.11330 1.20363 0.86222 0.94760 1.53134 0.90453 1.20621 0.93448 0.86461 0.85826 1.24635 0.95035 0.96782 0.97617 1.23820 0.97205 1.02799 0.98980 1.23300 0.97652 0.95848 0.94863 0.89164 1.23298 0.93619 0.96489 0.95458 1.64196 1.00810 1.58747 1.06534 1.24496 0.93526 0.99268 1.00696 0.92514 0.86916 0.87002 0.91933 0.94125 0.85385 0.92077 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.36 13.96 55.43 0.77 -26.59 14 2 C 0.09 2.52 5.47 -17.82 -0.10 2.43 14 3 Si 0.85 21.72 24.83 -169.99 -4.22 17.50 14 4 H -0.29 -7.37 7.03 56.52 0.40 -6.98 14 5 H -0.30 -7.83 7.11 56.52 0.40 -7.43 14 6 H -0.19 -4.69 5.30 56.52 0.30 -4.39 14 7 C -0.51 -14.22 9.62 -34.44 -0.33 -14.55 14 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 14 9 C 0.22 5.28 0.97 -128.70 -0.12 5.16 14 10 C -0.12 -2.74 8.07 -34.91 -0.28 -3.03 14 11 C -0.21 -4.03 10.18 -34.80 -0.35 -4.38 14 12 C -0.10 -1.75 5.41 -86.06 -0.47 -2.21 14 13 H 0.09 1.36 8.14 -51.93 -0.42 0.94 14 14 C 0.04 0.76 6.92 -0.84 -0.01 0.75 14 15 N -0.67 -14.70 4.38 -93.33 -0.41 -15.11 14 16 C -0.14 -2.86 6.57 -22.26 -0.15 -3.01 14 17 H 0.27 7.67 8.31 -40.82 -0.34 7.33 14 18 H 0.11 2.62 6.68 -52.49 -0.35 2.27 14 19 H 0.11 1.87 8.06 -52.49 -0.42 1.45 14 20 H 0.06 1.12 8.07 -51.93 -0.42 0.71 14 21 H 0.04 0.65 8.14 -51.93 -0.42 0.23 14 22 H 0.33 7.04 8.88 -39.29 -0.35 6.69 14 23 H 0.06 1.18 8.14 -51.93 -0.42 0.76 14 24 H 0.07 1.39 8.14 -51.93 -0.42 0.97 14 LS Contribution 196.44 15.07 2.96 2.96 Total: -1.00 -30.01 196.44 -5.60 -35.61 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -2.90 Total: 4.46 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -1.81 Total: -18.84 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.36 Total: -41.70 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.22 Total: 17.50 kcal Total LS contribution 2.96 Total: 2.96 kcal Total: -30.01 -5.60 -35.61 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104612933.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.686 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds