Wall clock time and date at job start Mon Mar 30 2020 01:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48499 * 109.46910 * 269.99479 * 3 2 1 5 5 H 1.48498 * 109.47251 * 29.99725 * 3 2 1 6 6 H 1.48500 * 109.47011 * 149.99874 * 3 2 1 7 7 C 1.37881 * 119.99459 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00358 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99598 * 180.02562 * 7 2 1 10 10 C 1.53298 * 116.10046 * 298.98450 * 9 7 2 11 11 C 1.31889 * 108.28623 * 199.31387 * 10 9 7 12 12 C 1.53498 * 107.87742 * 359.87751 * 11 10 9 13 13 H 1.09001 * 116.74188 * 162.36419 * 12 11 10 14 14 C 1.56911 * 103.13747 * 292.13655 * 12 11 10 15 15 N 1.48466 * 104.11856 * 67.00156 * 14 12 11 16 16 C 1.57031 * 99.99103 * 34.12883 * 12 11 10 17 17 H 0.96999 * 119.99882 * 0.02562 * 1 2 3 18 18 H 1.07998 * 125.85676 * 19.31959 * 10 9 7 19 19 H 1.08002 * 126.05852 * 179.60667 * 11 10 9 20 20 H 1.09006 * 110.59386 * 308.30931 * 14 12 11 21 21 H 1.09002 * 110.44693 * 185.62082 * 14 12 11 22 22 H 1.00900 * 111.00284 * 119.68400 * 15 14 12 23 23 H 1.08998 * 112.75980 * 193.71676 * 16 12 11 24 24 H 1.09005 * 112.48764 * 65.51004 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 6 4.1863 -0.5274 -1.2030 11 6 5.4297 -0.9616 -1.2734 12 6 5.6526 -1.9426 -0.1140 13 1 6.5117 -2.6087 -0.1934 14 6 5.5816 -1.0194 1.1529 15 7 4.1684 -0.5661 1.1918 16 6 4.2262 -2.5939 -0.0302 17 1 -0.4850 0.8400 -0.0004 18 1 3.7232 0.1772 -1.8778 19 1 6.1601 -0.6805 -2.0177 20 1 6.2528 -0.1674 1.0446 21 1 5.8253 -1.5864 2.0513 22 1 3.7190 -0.8560 2.0475 23 1 4.0759 -3.1632 0.8871 24 1 3.9790 -3.1722 -0.9205 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104612933.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:58 Heat of formation + Delta-G solvation = 34.598138 kcal Electronic energy + Delta-G solvation = -9492.954620 eV Core-core repulsion = 7792.803707 eV Total energy + Delta-G solvation = -1700.150913 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 165.085 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.34771 -34.72554 -32.57888 -30.66522 -28.89685 -26.20034 -22.81072 -21.14328 -19.77690 -18.34683 -17.11619 -16.12213 -15.54166 -15.26796 -14.69793 -14.26615 -13.35135 -13.04102 -12.54171 -12.43435 -12.08555 -11.78029 -11.59899 -11.47899 -11.37346 -10.68772 -9.78591 -8.91797 -8.33095 -6.44765 1.32595 1.43767 1.62604 1.86175 2.51243 3.01240 3.68952 3.80881 3.86151 4.18717 4.42563 4.51748 4.72599 4.77625 5.06630 5.10177 5.17319 5.25309 5.46052 5.69734 5.96873 6.16059 6.21952 6.65268 6.86986 7.32324 8.80267 Molecular weight = 165.08amu Principal moments of inertia in cm(-1) A = 0.066183 B = 0.023125 C = 0.021222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.968833 B = 1210.528622 C = 1319.088451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.034 3.966 3 Si 0.920 3.080 4 H -0.292 1.292 5 H -0.312 1.312 6 H -0.171 1.171 7 C -0.508 4.508 8 H 0.036 0.964 9 C 0.207 3.793 10 C -0.171 4.171 11 C -0.172 4.172 12 C -0.081 4.081 13 H 0.134 0.866 14 C 0.041 3.959 15 N -0.687 5.687 16 C -0.142 4.142 17 H 0.266 0.734 18 H 0.096 0.904 19 H 0.147 0.853 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.329 0.671 23 H 0.066 0.934 24 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.984 -1.409 0.608 13.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.165 4.165 3 Si 0.746 3.254 4 H -0.219 1.219 5 H -0.240 1.240 6 H -0.092 1.092 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.119 3.881 10 C -0.190 4.190 11 C -0.191 4.191 12 C -0.099 4.099 13 H 0.152 0.848 14 C -0.089 4.089 15 N -0.316 5.316 16 C -0.181 4.181 17 H 0.074 0.926 18 H 0.114 0.886 19 H 0.164 0.836 20 H 0.092 0.908 21 H 0.087 0.913 22 H 0.144 0.856 23 H 0.085 0.915 24 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.948 -0.633 0.376 12.969 hybrid contribution -0.787 -0.089 0.002 0.792 sum 12.161 -0.722 0.378 12.188 Atomic orbital electron populations 1.70057 1.08573 1.28271 1.51401 1.25785 0.95083 1.03298 0.92384 0.86334 0.83706 0.77050 0.78348 1.21883 1.24030 1.09185 1.20610 0.89363 0.92932 1.51732 0.94621 1.20451 0.90906 0.89365 0.87365 1.24413 0.96858 0.99463 0.98232 1.24262 0.96063 1.00154 0.98644 1.23423 0.97213 0.95477 0.93837 0.84826 1.23410 0.91185 0.97363 0.96893 1.64009 1.02792 1.59156 1.05673 1.24462 0.95154 0.97651 1.00823 0.92584 0.88569 0.83584 0.90838 0.91305 0.85581 0.91525 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.16 13.96 21.45 0.30 -59.86 14 2 C 0.03 2.03 5.47 84.66 0.46 2.49 14 3 Si 0.92 45.96 24.83 68.60 1.70 47.66 14 4 H -0.29 -14.48 7.03 99.48 0.70 -13.78 14 5 H -0.31 -15.85 7.11 99.48 0.71 -15.14 14 6 H -0.17 -7.92 5.30 99.48 0.53 -7.39 14 7 C -0.51 -29.35 9.62 25.60 0.25 -29.10 14 8 H 0.04 2.28 8.06 -2.91 -0.02 2.25 14 9 C 0.21 9.55 0.97 3.79 0.00 9.56 14 10 C -0.17 -7.34 8.07 25.70 0.21 -7.13 14 11 C -0.17 -5.84 10.18 25.77 0.26 -5.58 14 12 C -0.08 -2.46 5.41 -7.84 -0.04 -2.50 14 13 H 0.13 3.05 8.14 -2.39 -0.02 3.03 14 14 C 0.04 1.29 6.92 87.37 0.60 1.90 14 15 N -0.69 -28.24 4.38 -449.20 -1.97 -30.21 14 16 C -0.14 -5.41 6.57 33.49 0.22 -5.19 14 17 H 0.27 15.97 8.31 -92.71 -0.77 15.20 14 18 H 0.10 4.40 6.68 -2.91 -0.02 4.38 14 19 H 0.15 3.98 8.06 -2.91 -0.02 3.96 14 20 H 0.07 2.22 8.07 -2.38 -0.02 2.20 14 21 H 0.07 1.83 8.14 -2.39 -0.02 1.81 14 22 H 0.33 13.43 8.88 -89.69 -0.80 12.64 14 23 H 0.07 2.43 8.14 -2.39 -0.02 2.41 14 24 H 0.06 2.45 8.14 -2.38 -0.02 2.43 14 Total: -1.00 -66.16 196.44 2.20 -63.96 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.20 Total: 14.01 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 1.96 Total: -35.56 kcal Atomic # 7 Polarization: -88.40 SS G_CDS: -1.67 Total: -90.07 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.70 Total: 47.66 kcal Total: -66.16 2.20 -63.96 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104612933.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.560 kcal (2) G-P(sol) polarization free energy of solvation -66.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds