Wall clock time and date at job start Mon Mar 30 2020 01:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30689 * 1 3 3 Si 1.86798 * 119.99847 * 2 1 4 4 H 1.48503 * 109.47282 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47518 * 300.00338 * 3 2 1 6 6 H 1.48506 * 109.47050 * 60.00062 * 3 2 1 7 7 C 1.40067 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00582 * 180.02562 * 7 2 1 9 9 C 1.41602 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.40543 * 120.62607 * 180.02562 * 9 7 2 11 11 C 1.39435 * 118.07085 * 179.97438 * 10 9 7 12 12 N 1.38603 * 120.46328 * 179.72671 * 11 10 9 13 13 N 1.33035 * 119.07309 * 0.02562 * 11 10 9 14 14 C 1.31981 * 121.16959 * 359.97438 * 13 11 10 15 15 N 1.31374 * 122.15306 * 0.02562 * 14 13 11 16 16 H 0.97002 * 120.00463 * 359.97438 * 1 2 3 17 17 H 1.08006 * 120.96695 * 359.95714 * 10 9 7 18 18 H 0.96998 * 120.00609 * 359.97438 * 12 11 10 19 19 H 0.97003 * 119.99967 * 180.02562 * 12 11 10 20 20 H 1.08002 * 118.92303 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7009 1.3465 0.0006 5 1 1.8821 2.3965 -1.2124 6 1 1.8821 2.3964 1.2126 7 6 2.0073 -1.2130 -0.0005 8 1 3.0873 -1.2130 -0.0001 9 6 1.2993 -2.4393 -0.0005 10 6 1.9888 -3.6640 -0.0005 11 6 1.2386 -4.8393 0.0000 12 7 1.8675 -6.0745 -0.0057 13 7 -0.0893 -4.7586 0.0000 14 6 -0.7027 -3.5900 0.0000 15 7 -0.0427 -2.4540 -0.0005 16 1 -0.4851 0.8400 0.0004 17 1 3.0684 -3.6940 -0.0012 18 1 2.8361 -6.1256 -0.0104 19 1 1.3389 -6.8879 -0.0056 20 1 -1.7824 -3.5668 -0.0005 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107286351.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:45 Heat of formation + Delta-G solvation = 37.261708 kcal Electronic energy + Delta-G solvation = -8751.505942 eV Core-core repulsion = 6947.930187 eV Total energy + Delta-G solvation = -1803.575755 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 165.060 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.71166 -34.47774 -33.32461 -30.79867 -28.78952 -26.03359 -22.28241 -21.34915 -17.79725 -16.58974 -15.67293 -14.83249 -13.92492 -13.55033 -13.05787 -13.03432 -12.45113 -11.35971 -11.14462 -10.67476 -10.35523 -10.16670 -9.41715 -8.83535 -8.19724 -7.37482 -7.02812 -6.39781 -4.68519 2.78935 3.08098 3.08100 3.12711 3.40018 3.92415 4.58721 4.84101 5.91954 6.01555 6.41319 6.74757 7.01368 7.08999 7.35720 7.64312 8.08037 8.26225 8.40112 8.67408 8.89992 9.31342 10.22013 10.36455 Molecular weight = 165.06amu Principal moments of inertia in cm(-1) A = 0.096377 B = 0.015236 C = 0.013217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 290.455198 B = 1837.311480 C = 2117.924796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.710 5.710 2 C 0.071 3.929 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.426 4.426 8 H 0.085 0.915 9 C 0.291 3.709 10 C -0.393 4.393 11 C 0.421 3.579 12 N -0.866 5.866 13 N -0.670 5.670 14 C 0.313 3.687 15 N -0.537 5.537 16 H 0.274 0.726 17 H 0.100 0.900 18 H 0.396 0.604 19 H 0.389 0.611 20 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.840 -1.569 -0.009 3.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.156 4.156 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.459 4.459 8 H 0.103 0.897 9 C 0.164 3.836 10 C -0.423 4.423 11 C 0.184 3.816 12 N -0.411 5.411 13 N -0.404 5.404 14 C 0.020 3.980 15 N -0.260 5.260 16 H 0.085 0.915 17 H 0.118 0.882 18 H 0.224 0.776 19 H 0.216 0.784 20 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.695 -1.285 -0.009 2.127 hybrid contribution 1.467 0.295 0.001 1.496 sum 3.162 -0.990 -0.008 3.313 Atomic orbital electron populations 1.70117 1.07266 1.27871 1.27884 1.26121 0.94922 1.01210 0.93335 0.86246 0.80834 0.80974 0.78611 1.18353 1.19743 1.19749 1.19655 0.94281 0.89123 1.42882 0.89680 1.18534 0.88097 0.91568 0.85381 1.21615 0.98810 0.92953 1.28963 1.18189 0.89282 0.85376 0.88759 1.41950 1.08151 1.04840 1.86130 1.67627 1.08326 1.31282 1.33132 1.24186 0.99392 0.83496 0.90910 1.69312 1.08382 1.26771 1.21519 0.91499 0.88183 0.77631 0.78388 0.82511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.03 11.52 55.55 0.64 -18.39 14 2 C 0.07 1.81 5.50 -17.35 -0.10 1.72 14 3 Si 0.91 18.53 29.56 -169.99 -5.02 13.51 14 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 14 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 14 6 H -0.27 -5.45 7.11 56.52 0.40 -5.04 14 7 C -0.43 -11.63 9.19 -37.61 -0.35 -11.97 14 8 H 0.09 2.17 7.85 -52.48 -0.41 1.75 14 9 C 0.29 8.29 6.58 -84.67 -0.56 7.73 14 10 C -0.39 -10.12 9.81 -38.27 -0.38 -10.50 14 11 C 0.42 10.11 7.82 -154.75 -1.21 8.90 14 12 N -0.87 -15.77 9.06 31.22 0.28 -15.49 14 13 N -0.67 -16.85 10.45 -13.88 -0.15 -17.00 14 14 C 0.31 8.09 12.27 -92.35 -1.13 6.96 14 15 N -0.54 -15.34 8.04 -12.58 -0.10 -15.44 14 16 H 0.27 6.57 8.29 -40.82 -0.34 6.23 14 17 H 0.10 2.37 8.06 -52.48 -0.42 1.95 14 18 H 0.40 6.05 8.84 -40.82 -0.36 5.69 14 19 H 0.39 6.30 8.95 -40.82 -0.37 5.93 14 20 H 0.16 3.52 8.06 -52.49 -0.42 3.10 14 LS Contribution 191.17 15.07 2.88 2.88 Total: -1.00 -31.02 191.17 -6.30 -37.32 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -1.12 Total: 9.78 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -3.72 Total: 2.84 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: 0.68 Total: -66.32 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 2.88 Total: 2.88 kcal Total: -31.02 -6.30 -37.32 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107286351.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.579 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds