Wall clock time and date at job start Mon Mar 30 2020 01:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30689 * 1 3 3 Si 1.86798 * 119.99847 * 2 1 4 4 H 1.48503 * 109.47282 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47518 * 300.00338 * 3 2 1 6 6 H 1.48506 * 109.47050 * 60.00062 * 3 2 1 7 7 C 1.40067 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00582 * 180.02562 * 7 2 1 9 9 C 1.41602 * 120.00105 * 359.97438 * 7 2 1 10 10 C 1.40543 * 120.62607 * 180.02562 * 9 7 2 11 11 C 1.39435 * 118.07085 * 179.97438 * 10 9 7 12 12 N 1.38603 * 120.46328 * 179.72671 * 11 10 9 13 13 N 1.33035 * 119.07309 * 0.02562 * 11 10 9 14 14 C 1.31981 * 121.16959 * 359.97438 * 13 11 10 15 15 N 1.31374 * 122.15306 * 0.02562 * 14 13 11 16 16 H 0.97002 * 120.00463 * 359.97438 * 1 2 3 17 17 H 1.08006 * 120.96695 * 359.95714 * 10 9 7 18 18 H 0.96998 * 120.00609 * 359.97438 * 12 11 10 19 19 H 0.97003 * 119.99967 * 180.02562 * 12 11 10 20 20 H 1.08002 * 118.92303 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7009 1.3465 0.0006 5 1 1.8821 2.3965 -1.2124 6 1 1.8821 2.3964 1.2126 7 6 2.0073 -1.2130 -0.0005 8 1 3.0873 -1.2130 -0.0001 9 6 1.2993 -2.4393 -0.0005 10 6 1.9888 -3.6640 -0.0005 11 6 1.2386 -4.8393 0.0000 12 7 1.8675 -6.0745 -0.0057 13 7 -0.0893 -4.7586 0.0000 14 6 -0.7027 -3.5900 0.0000 15 7 -0.0427 -2.4540 -0.0005 16 1 -0.4851 0.8400 0.0004 17 1 3.0684 -3.6940 -0.0012 18 1 2.8361 -6.1256 -0.0104 19 1 1.3389 -6.8879 -0.0056 20 1 -1.7824 -3.5668 -0.0005 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107286351.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:45 Heat of formation + Delta-G solvation = 15.918496 kcal Electronic energy + Delta-G solvation = -8752.431453 eV Core-core repulsion = 6947.930187 eV Total energy + Delta-G solvation = -1804.501266 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 165.060 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.65883 -36.33413 -35.18472 -32.77084 -30.68468 -28.00678 -24.24574 -23.28440 -19.71747 -18.40378 -17.49694 -16.58959 -15.73450 -15.50166 -15.01981 -14.82763 -14.30101 -13.03555 -12.91129 -12.64898 -12.15139 -11.86407 -11.26915 -10.82231 -10.18356 -9.36809 -8.84069 -8.32348 -6.71925 0.87420 1.26283 1.42600 1.59077 1.61729 2.22639 2.90060 2.95739 3.98649 4.04507 4.49333 4.85369 5.10763 5.20461 5.38675 5.78801 6.11638 6.51428 6.62551 6.83342 6.90430 7.49478 8.29770 8.42282 Molecular weight = 165.06amu Principal moments of inertia in cm(-1) A = 0.096377 B = 0.015236 C = 0.013217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 290.455198 B = 1837.311480 C = 2117.924796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.024 3.976 3 Si 0.995 3.005 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.093 0.907 9 C 0.255 3.745 10 C -0.415 4.415 11 C 0.419 3.581 12 N -0.840 5.840 13 N -0.674 5.674 14 C 0.303 3.697 15 N -0.570 5.570 16 H 0.283 0.717 17 H 0.113 0.887 18 H 0.412 0.588 19 H 0.403 0.597 20 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.662 -1.386 -0.011 3.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.199 4.199 3 Si 0.814 3.186 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.111 0.889 9 C 0.129 3.871 10 C -0.446 4.446 11 C 0.180 3.820 12 N -0.386 5.386 13 N -0.409 5.409 14 C 0.010 3.990 15 N -0.293 5.293 16 H 0.094 0.906 17 H 0.131 0.869 18 H 0.243 0.757 19 H 0.232 0.768 20 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.544 -1.166 -0.011 2.799 hybrid contribution 1.186 0.114 0.002 1.191 sum 3.730 -1.052 -0.009 3.875 Atomic orbital electron populations 1.70194 1.09088 1.29599 1.28050 1.27118 0.95798 1.04835 0.92143 0.84985 0.79331 0.75346 0.78958 1.17594 1.18879 1.18891 1.20077 0.94928 0.90051 1.43860 0.88919 1.19051 0.88693 0.93147 0.86235 1.21746 0.99584 0.93003 1.30233 1.18439 0.89072 0.86883 0.87575 1.41794 1.09194 1.03424 1.84208 1.67743 1.08843 1.30768 1.33514 1.24725 1.00648 0.83391 0.90197 1.69296 1.08868 1.28070 1.23108 0.90586 0.86862 0.75684 0.76753 0.80020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.34 11.52 21.84 0.25 -40.08 14 2 C 0.02 1.24 5.50 85.31 0.47 1.71 14 3 Si 0.99 37.47 29.56 68.60 2.03 39.49 14 4 H -0.25 -9.11 7.11 99.48 0.71 -8.41 14 5 H -0.26 -9.53 7.11 99.48 0.71 -8.83 14 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 14 7 C -0.46 -25.09 9.19 23.54 0.22 -24.87 14 8 H 0.09 4.73 7.85 -2.91 -0.02 4.71 14 9 C 0.26 14.70 6.58 40.17 0.26 14.96 14 10 C -0.42 -21.31 9.81 23.12 0.23 -21.08 14 11 C 0.42 19.65 7.82 133.08 1.04 20.69 14 12 N -0.84 -28.53 9.06 -55.14 -0.50 -29.03 14 13 N -0.67 -33.31 10.45 -197.82 -2.07 -35.37 14 14 C 0.30 15.65 12.27 180.95 2.22 17.87 14 15 N -0.57 -32.96 8.04 -193.71 -1.56 -34.52 14 16 H 0.28 13.60 8.29 -92.71 -0.77 12.83 14 17 H 0.11 5.30 8.06 -2.91 -0.02 5.28 14 18 H 0.41 11.46 8.84 -92.71 -0.82 10.64 14 19 H 0.40 11.89 8.95 -92.71 -0.83 11.06 14 20 H 0.18 8.09 8.06 -2.91 -0.02 8.07 14 Total: -1.00 -65.93 191.17 2.22 -63.71 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -0.37 Total: 26.52 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 4.44 Total: 9.29 kcal Atomic # 7 Polarization: -135.13 SS G_CDS: -3.87 Total: -139.01 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.49 kcal Total: -65.93 2.22 -63.71 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107286351.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.629 kcal (2) G-P(sol) polarization free energy of solvation -65.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds