Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31234 * 125.46108 * 2 1 4 4 N 1.40023 * 109.11228 * 179.97438 * 3 2 1 5 5 H 0.97003 * 126.20749 * 180.02562 * 4 3 2 6 6 C 1.37465 * 107.59500 * 0.02562 * 4 3 2 7 7 C 1.40234 * 126.66162 * 179.73518 * 6 4 3 8 8 H 1.08000 * 119.99883 * 180.02562 * 7 6 4 9 9 C 1.40165 * 120.00276 * 0.02883 * 7 6 4 10 10 N 1.30760 * 119.99715 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00170 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47383 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46982 * 119.99791 * 11 9 7 14 14 H 1.48498 * 109.47192 * 240.00035 * 11 9 7 15 15 C 1.38701 * 125.46062 * 179.97438 * 2 1 3 16 16 C 1.50701 * 126.22745 * 0.04168 * 15 2 1 17 17 H 1.09002 * 109.47102 * 89.97225 * 1 2 3 18 18 H 1.08996 * 109.47188 * 209.97674 * 1 2 3 19 19 H 1.09007 * 109.46901 * 329.97501 * 1 2 3 20 20 H 0.97000 * 120.00151 * 180.02562 * 10 9 7 21 21 H 1.08999 * 109.47444 * 269.97142 * 16 15 2 22 22 H 1.08995 * 109.47444 * 29.97982 * 16 15 2 23 23 H 1.09001 * 109.46875 * 149.97535 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0689 0.0000 4 7 3.6120 0.6748 0.0006 5 1 4.3821 1.2645 0.0011 6 6 3.6419 -0.6996 0.0004 7 6 4.7847 -1.5122 -0.0044 8 1 4.6828 -2.5874 -0.0045 9 6 6.0593 -0.9291 -0.0090 10 7 6.1827 0.3726 -0.0094 11 14 7.5816 -2.0116 -0.0147 12 1 7.1737 -3.4395 -0.0139 13 1 8.3863 -1.7279 -1.2302 14 1 8.3951 -1.7281 1.1949 15 6 2.3117 -1.1297 0.0005 16 6 1.8382 -2.5604 0.0003 17 1 -0.3633 0.0005 -1.0277 18 1 -0.3633 -0.8902 0.5134 19 1 -0.3633 0.8898 0.5143 20 1 7.0648 0.7762 -0.0129 21 1 1.7239 -2.9056 1.0278 22 1 0.8793 -2.6258 -0.5138 23 1 2.5691 -3.1849 -0.5135 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107290171.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = 34.242987 kcal Electronic energy + Delta-G solvation = -9165.523168 eV Core-core repulsion = 7399.930944 eV Total energy + Delta-G solvation = -1765.592224 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.94242 -33.88221 -31.42207 -30.34203 -27.16820 -25.82644 -23.89730 -19.67661 -17.76892 -17.15007 -15.18378 -14.57944 -13.42911 -13.14244 -12.23025 -11.96049 -11.91985 -11.64685 -11.51177 -11.20498 -11.18628 -10.71941 -10.55110 -9.91861 -9.55500 -8.72290 -7.69718 -7.03237 -6.82922 -4.56021 2.85211 3.00403 3.07324 3.69496 3.82392 4.17018 4.94022 5.23798 6.11491 6.23261 6.41976 6.52127 6.59678 6.85864 6.88422 7.02461 7.29936 7.47043 7.67357 7.91983 8.35642 8.65382 8.70716 9.51377 9.78650 10.05743 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.081402 B = 0.015892 C = 0.013427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.890035 B = 1761.420026 C = 2084.860280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.073 3.927 3 N -0.392 5.392 4 N -0.490 5.490 5 H 0.439 0.561 6 C 0.272 3.728 7 C -0.441 4.441 8 H 0.096 0.904 9 C 0.069 3.931 10 N -0.839 5.839 11 Si 0.934 3.066 12 H -0.259 1.259 13 H -0.273 1.273 14 H -0.273 1.273 15 C -0.383 4.383 16 C -0.034 4.034 17 H 0.057 0.943 18 H 0.060 0.940 19 H 0.054 0.946 20 H 0.289 0.711 21 H 0.027 0.973 22 H 0.033 0.967 23 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.939 -3.370 -0.045 3.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.090 4.090 3 N -0.218 5.218 4 N -0.209 5.209 5 H 0.292 0.708 6 C 0.146 3.854 7 C -0.478 4.478 8 H 0.114 0.886 9 C -0.146 4.146 10 N -0.472 5.472 11 Si 0.758 3.242 12 H -0.182 1.182 13 H -0.198 1.198 14 H -0.198 1.198 15 C -0.396 4.396 16 C -0.092 4.092 17 H 0.076 0.924 18 H 0.079 0.921 19 H 0.073 0.927 20 H 0.100 0.900 21 H 0.046 0.954 22 H 0.052 0.948 23 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.820 -1.896 -0.046 2.066 hybrid contribution 1.234 -0.903 -0.003 1.529 sum 0.415 -2.799 -0.049 2.830 Atomic orbital electron populations 1.19942 0.89932 1.01119 1.00878 1.21294 0.94782 0.91755 1.01124 1.76730 0.88566 1.23048 1.33490 1.47142 1.05009 1.05713 1.63000 0.70844 1.18547 0.93235 0.83277 0.90359 1.19023 0.88338 0.94988 1.45446 0.88646 1.26064 1.01644 0.95381 0.91504 1.68805 1.26870 1.11240 1.40246 0.85825 0.79288 0.80583 0.78495 1.18204 1.19814 1.19805 1.19635 0.91559 0.94316 1.34076 1.19533 0.98122 0.93173 0.98342 0.92445 0.92059 0.92690 0.89951 0.95378 0.94787 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.16 10.08 36.01 0.36 -0.79 14 2 C 0.07 1.84 7.15 -82.68 -0.59 1.25 14 3 N -0.39 -10.81 12.66 33.51 0.42 -10.39 14 4 N -0.49 -13.86 7.10 32.42 0.23 -13.63 14 5 H 0.44 12.16 6.36 -182.65 -1.16 11.00 14 6 C 0.27 7.65 6.77 -84.00 -0.57 7.08 14 7 C -0.44 -11.76 9.09 -38.11 -0.35 -12.10 14 8 H 0.10 2.41 7.32 -52.49 -0.38 2.02 14 9 C 0.07 1.70 5.50 -17.29 -0.10 1.61 14 10 N -0.84 -21.23 10.74 55.56 0.60 -20.63 14 11 Si 0.93 18.48 29.56 -169.99 -5.03 13.45 14 12 H -0.26 -5.02 7.11 56.52 0.40 -4.62 14 13 H -0.27 -5.31 7.11 56.52 0.40 -4.91 14 14 H -0.27 -5.31 7.11 56.52 0.40 -4.91 14 15 C -0.38 -10.00 6.21 -103.87 -0.65 -10.65 14 16 C -0.03 -0.73 9.78 36.01 0.35 -0.38 14 17 H 0.06 1.01 8.14 -51.93 -0.42 0.59 14 18 H 0.06 1.06 7.82 -51.93 -0.41 0.65 14 19 H 0.05 0.99 8.14 -51.92 -0.42 0.57 14 20 H 0.29 6.58 8.29 -40.82 -0.34 6.24 14 21 H 0.03 0.57 8.14 -51.93 -0.42 0.14 14 22 H 0.03 0.64 7.84 -51.93 -0.41 0.24 14 23 H 0.04 0.89 7.57 -51.93 -0.39 0.50 14 LS Contribution 205.58 15.07 3.10 3.10 Total: -1.00 -29.22 205.58 -5.36 -34.58 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -3.15 Total: 7.51 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -1.53 Total: -13.99 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: 1.25 Total: -44.65 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 3.10 Total: 3.10 kcal Total: -29.22 -5.36 -34.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107290171.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.820 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds