Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31234 * 125.46108 * 2 1 4 4 N 1.40023 * 109.11228 * 179.97438 * 3 2 1 5 5 H 0.97003 * 126.20749 * 180.02562 * 4 3 2 6 6 C 1.37465 * 107.59500 * 0.02562 * 4 3 2 7 7 C 1.40234 * 126.66162 * 179.73518 * 6 4 3 8 8 H 1.08000 * 119.99883 * 180.02562 * 7 6 4 9 9 C 1.40165 * 120.00276 * 0.02883 * 7 6 4 10 10 N 1.30760 * 119.99715 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00170 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47383 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46982 * 119.99791 * 11 9 7 14 14 H 1.48498 * 109.47192 * 240.00035 * 11 9 7 15 15 C 1.38701 * 125.46062 * 179.97438 * 2 1 3 16 16 C 1.50701 * 126.22745 * 0.04168 * 15 2 1 17 17 H 1.09002 * 109.47102 * 89.97225 * 1 2 3 18 18 H 1.08996 * 109.47188 * 209.97674 * 1 2 3 19 19 H 1.09007 * 109.46901 * 329.97501 * 1 2 3 20 20 H 0.97000 * 120.00151 * 180.02562 * 10 9 7 21 21 H 1.08999 * 109.47444 * 269.97142 * 16 15 2 22 22 H 1.08995 * 109.47444 * 29.97982 * 16 15 2 23 23 H 1.09001 * 109.46875 * 149.97535 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2684 1.0689 0.0000 4 7 3.6120 0.6748 0.0006 5 1 4.3821 1.2645 0.0011 6 6 3.6419 -0.6996 0.0004 7 6 4.7847 -1.5122 -0.0044 8 1 4.6828 -2.5874 -0.0045 9 6 6.0593 -0.9291 -0.0090 10 7 6.1827 0.3726 -0.0094 11 14 7.5816 -2.0116 -0.0147 12 1 7.1737 -3.4395 -0.0139 13 1 8.3863 -1.7279 -1.2302 14 1 8.3951 -1.7281 1.1949 15 6 2.3117 -1.1297 0.0005 16 6 1.8382 -2.5604 0.0003 17 1 -0.3633 0.0005 -1.0277 18 1 -0.3633 -0.8902 0.5134 19 1 -0.3633 0.8898 0.5143 20 1 7.0648 0.7762 -0.0129 21 1 1.7239 -2.9056 1.0278 22 1 0.8793 -2.6258 -0.5138 23 1 2.5691 -3.1849 -0.5135 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107290171.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = 15.035138 kcal Electronic energy + Delta-G solvation = -9166.356083 eV Core-core repulsion = 7399.930944 eV Total energy + Delta-G solvation = -1766.425139 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.91568 -35.80373 -33.27806 -32.23615 -28.97249 -27.71285 -25.80464 -21.62709 -19.68113 -19.15253 -17.08673 -16.39699 -15.28249 -14.86322 -14.03565 -13.80510 -13.50244 -13.35499 -13.22011 -12.86292 -12.80016 -12.50527 -12.29608 -11.69745 -11.36680 -10.71003 -9.71626 -8.90310 -8.83300 -6.56906 1.21118 1.39168 1.57130 1.81572 2.16386 2.27579 2.95084 3.25121 4.41045 4.60913 4.83718 4.94962 5.03691 5.12049 5.18286 5.22964 5.53286 5.55201 5.73045 5.96526 6.39829 6.71966 6.76455 7.46350 7.75039 8.19762 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.081402 B = 0.015892 C = 0.013427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.890035 B = 1761.420026 C = 2084.860280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.065 3.935 3 N -0.426 5.426 4 N -0.509 5.509 5 H 0.433 0.567 6 C 0.236 3.764 7 C -0.471 4.471 8 H 0.102 0.898 9 C 0.027 3.973 10 N -0.862 5.862 11 Si 1.013 2.987 12 H -0.251 1.251 13 H -0.265 1.265 14 H -0.265 1.265 15 C -0.408 4.408 16 C -0.028 4.028 17 H 0.077 0.923 18 H 0.085 0.915 19 H 0.065 0.935 20 H 0.300 0.700 21 H 0.038 0.962 22 H 0.060 0.940 23 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.830 -4.675 -0.076 4.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 N -0.253 5.253 4 N -0.228 5.228 5 H 0.285 0.715 6 C 0.111 3.889 7 C -0.507 4.507 8 H 0.120 0.880 9 C -0.185 4.185 10 N -0.494 5.494 11 Si 0.832 3.168 12 H -0.174 1.174 13 H -0.190 1.190 14 H -0.189 1.189 15 C -0.420 4.420 16 C -0.086 4.086 17 H 0.096 0.904 18 H 0.103 0.897 19 H 0.084 0.916 20 H 0.112 0.888 21 H 0.057 0.943 22 H 0.079 0.921 23 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.745 -3.193 -0.076 3.279 hybrid contribution 1.191 -0.450 0.006 1.274 sum 0.447 -3.643 -0.070 3.670 Atomic orbital electron populations 1.20092 0.85807 1.02853 1.02686 1.22217 0.97453 0.90922 0.99036 1.76673 0.88606 1.24509 1.35471 1.47228 1.05296 1.05940 1.64340 0.71497 1.19219 0.94981 0.83557 0.91186 1.19363 0.89186 0.95367 1.46792 0.87977 1.27118 1.04570 0.96763 0.90054 1.68841 1.28370 1.12869 1.39307 0.84666 0.74627 0.78617 0.78847 1.17439 1.18953 1.18947 1.20291 0.91157 0.96659 1.33919 1.19550 0.99231 0.90459 0.99355 0.90445 0.89668 0.91637 0.88839 0.94340 0.92126 0.94083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.02 10.08 71.24 0.72 -1.30 14 2 C 0.07 3.27 7.15 42.76 0.31 3.58 14 3 N -0.43 -23.79 12.66 -47.91 -0.61 -24.40 14 4 N -0.51 -29.56 7.10 -51.33 -0.36 -29.93 14 5 H 0.43 24.86 6.36 -213.37 -1.36 23.50 14 6 C 0.24 13.46 6.77 39.12 0.27 13.72 14 7 C -0.47 -25.21 9.09 23.22 0.21 -25.00 14 8 H 0.10 5.13 7.32 -2.91 -0.02 5.11 14 9 C 0.03 1.34 5.50 85.32 0.47 1.81 14 10 N -0.86 -43.80 10.74 21.87 0.23 -43.57 14 11 Si 1.01 36.83 29.56 68.60 2.03 38.86 14 12 H -0.25 -8.77 7.11 99.48 0.71 -8.06 14 13 H -0.26 -9.25 7.11 99.48 0.71 -8.54 14 14 H -0.26 -9.24 7.11 99.48 0.71 -8.54 14 15 C -0.41 -21.13 6.21 -19.37 -0.12 -21.25 14 16 C -0.03 -1.16 9.78 71.24 0.70 -0.46 14 17 H 0.08 2.50 8.14 -2.39 -0.02 2.48 14 18 H 0.08 2.65 7.82 -2.39 -0.02 2.63 14 19 H 0.06 2.21 8.14 -2.38 -0.02 2.19 14 20 H 0.30 13.56 8.29 -92.71 -0.77 12.79 14 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 14 22 H 0.06 2.14 7.84 -2.39 -0.02 2.12 14 23 H 0.04 1.67 7.57 -2.39 -0.02 1.65 14 Total: -1.00 -62.84 205.58 3.70 -59.14 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -0.14 Total: 28.80 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 2.55 Total: -28.91 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -0.74 Total: -97.89 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Total: -62.84 3.70 -59.14 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107290171.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.179 kcal (2) G-P(sol) polarization free energy of solvation -62.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds