Wall clock time and date at job start Mon Mar 30 2020 02:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34335 * 126.43766 * 2 1 4 4 N 1.34483 * 107.66388 * 179.76894 * 3 2 1 5 5 C 1.30249 * 108.70163 * 0.42187 * 4 3 2 6 6 C 1.50700 * 125.62094 * 179.83538 * 5 4 3 7 7 C 1.50702 * 109.46869 * 89.69563 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48496 * 109.47341 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46983 * 120.00379 * 11 9 7 14 14 H 1.48503 * 109.47491 * 240.00192 * 11 9 7 15 15 O 1.33976 * 108.76153 * 359.57830 * 5 4 3 16 16 H 1.09004 * 109.46697 * 179.97438 * 1 2 3 17 17 H 1.08994 * 109.47005 * 299.99553 * 1 2 3 18 18 H 1.08995 * 109.47395 * 59.99792 * 1 2 3 19 19 H 1.07999 * 126.17191 * 0.02733 * 3 2 1 20 20 H 1.09004 * 109.47210 * 329.69856 * 6 5 4 21 21 H 1.08994 * 109.47551 * 209.69508 * 6 5 4 22 22 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5782 0.6479 0.0052 5 6 3.5766 -0.6546 -0.0008 6 6 4.8005 -1.5338 -0.0015 7 6 5.2089 -1.8272 1.4192 8 1 4.6390 -1.4183 2.2404 9 6 6.3066 -2.6229 1.6706 10 7 7.0004 -3.1211 0.6706 11 14 6.8083 -2.9928 3.4314 12 1 5.8710 -2.3186 4.3653 13 1 6.7652 -4.4595 3.6606 14 1 8.1873 -2.4951 3.6683 15 8 2.3075 -1.0839 -0.0006 16 1 -0.3633 -1.0277 -0.0005 17 1 -0.3633 0.5137 0.8900 18 1 -0.3634 0.5138 -0.8899 19 1 1.9821 2.1114 0.0004 20 1 5.6147 -1.0228 -0.5154 21 1 4.5762 -2.4684 -0.5154 22 1 7.7729 -3.6806 0.8474 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107323884.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:26 Heat of formation + Delta-G solvation = 5.767936 kcal Electronic energy + Delta-G solvation = -9012.001829 eV Core-core repulsion = 7147.456172 eV Total energy + Delta-G solvation = -1864.545657 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.069 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.46264 -33.96502 -33.48060 -31.97411 -29.34684 -25.61468 -23.24864 -21.37150 -20.11330 -16.70822 -16.06764 -15.58911 -14.60420 -13.96622 -13.30246 -12.91924 -12.55143 -12.18051 -11.97011 -11.49019 -10.88632 -10.77141 -10.50342 -10.05375 -9.66006 -9.56465 -8.54004 -7.83603 -6.15818 -4.20336 2.22629 3.27218 3.33821 3.38722 3.52526 3.56160 4.38461 5.10069 5.20579 5.27372 5.48802 5.59016 5.75841 5.90421 6.60684 6.74427 7.07520 7.31159 7.31486 7.78798 8.06934 8.68074 8.80579 9.43364 10.94432 Molecular weight = 167.07amu Principal moments of inertia in cm(-1) A = 0.085559 B = 0.011859 C = 0.011440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.182121 B = 2360.506529 C = 2447.056401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.096 4.096 3 C -0.044 4.044 4 N -0.511 5.511 5 C 0.248 3.752 6 C 0.103 3.897 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.062 3.938 10 N -0.891 5.891 11 Si 0.905 3.095 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.281 1.281 15 O -0.205 6.205 16 H 0.071 0.929 17 H 0.078 0.922 18 H 0.078 0.922 19 H 0.171 0.829 20 H 0.066 0.934 21 H 0.049 0.951 22 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.303 3.721 -0.648 10.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.149 4.149 3 C -0.183 4.183 4 N -0.240 5.240 5 C 0.043 3.957 6 C 0.065 3.935 7 C -0.557 4.557 8 H 0.079 0.921 9 C -0.140 4.140 10 N -0.529 5.529 11 Si 0.733 3.267 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.207 1.207 15 O -0.094 6.094 16 H 0.090 0.910 17 H 0.097 0.903 18 H 0.097 0.903 19 H 0.188 0.812 20 H 0.083 0.917 21 H 0.067 0.933 22 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.612 3.939 -0.689 9.495 hybrid contribution -0.327 -0.483 0.931 1.098 sum -8.939 3.456 0.242 9.587 Atomic orbital electron populations 1.20073 0.85156 1.03496 1.02734 1.23182 0.94719 0.85519 1.11468 1.22957 0.88871 0.99590 1.06850 1.70525 1.21821 1.10138 1.21467 1.27784 0.84166 0.90403 0.93385 1.18069 0.83481 0.92238 0.99676 1.20919 1.12790 1.31399 0.90576 0.92145 1.24958 0.95834 0.95274 0.97968 1.69947 1.18615 1.33506 1.30840 0.86314 0.78523 0.78035 0.83873 1.19635 1.20747 1.20664 1.84443 1.18664 1.36229 1.70051 0.90975 0.90312 0.90336 0.81207 0.91660 0.93299 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.43 36.01 0.38 -0.33 14 2 C -0.10 -1.77 7.39 -35.69 -0.26 -2.03 14 3 C -0.04 -0.85 11.80 -17.77 -0.21 -1.06 14 4 N -0.51 -12.18 11.29 -11.10 -0.13 -12.31 14 5 C 0.25 6.13 7.53 -12.95 -0.10 6.03 14 6 C 0.10 2.75 5.60 -29.03 -0.16 2.59 14 7 C -0.52 -14.86 9.09 -34.44 -0.31 -15.17 14 8 H 0.06 1.75 7.74 -52.49 -0.41 1.35 14 9 C 0.06 1.75 5.46 -17.82 -0.10 1.66 14 10 N -0.89 -25.91 13.29 55.43 0.74 -25.17 14 11 Si 0.91 21.59 29.54 -169.99 -5.02 16.57 14 12 H -0.27 -6.45 7.11 56.52 0.40 -6.04 14 13 H -0.28 -6.57 7.11 56.52 0.40 -6.16 14 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 14 15 O -0.21 -4.65 10.78 5.36 0.06 -4.59 14 16 H 0.07 0.84 8.14 -51.93 -0.42 0.41 14 17 H 0.08 0.81 8.14 -51.93 -0.42 0.39 14 18 H 0.08 0.77 8.14 -51.93 -0.42 0.35 14 19 H 0.17 2.57 8.06 -52.49 -0.42 2.15 14 20 H 0.07 1.80 8.14 -51.93 -0.42 1.38 14 21 H 0.05 1.31 8.14 -51.93 -0.42 0.89 14 22 H 0.27 7.22 8.31 -40.82 -0.34 6.88 14 LS Contribution 208.34 15.07 3.14 3.14 Total: -1.00 -31.22 208.34 -4.06 -35.28 By element: Atomic # 1 Polarization: -2.54 SS G_CDS: -2.08 Total: -4.61 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -0.77 Total: -8.31 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.61 Total: -37.48 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: 0.06 Total: -4.59 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -31.22 -4.06 -35.28 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107323884.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.049 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds