Wall clock time and date at job start Mon Mar 30 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34666 * 125.98638 * 2 1 4 4 N 1.36883 * 106.81734 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.40238 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46950 * 270.00322 * 5 4 3 7 7 H 1.08000 * 120.00114 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99941 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99902 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 120.00140 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.46922 * 90.00286 * 10 8 6 12 12 H 1.48494 * 109.47149 * 210.00397 * 10 8 6 13 13 H 1.48497 * 109.46875 * 330.00478 * 10 8 6 14 14 C 1.35044 * 107.20248 * 0.02562 * 4 3 2 15 15 N 1.30494 * 108.70229 * 359.97438 * 14 4 3 16 16 H 1.09007 * 109.47112 * 90.00237 * 1 2 3 17 17 H 1.08997 * 109.47343 * 209.99890 * 1 2 3 18 18 H 1.09002 * 109.47391 * 330.00425 * 1 2 3 19 19 H 1.08000 * 126.59672 * 0.06655 * 3 2 1 20 20 H 1.08999 * 109.47008 * 29.99491 * 5 4 3 21 21 H 1.09001 * 109.47545 * 149.99900 * 5 4 3 22 22 H 0.96999 * 119.99605 * 179.97438 * 9 8 6 23 23 H 1.08006 * 125.64918 * 179.73494 * 14 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0897 0.0000 4 7 3.5912 0.6402 -0.0006 5 6 4.7996 1.4685 -0.0013 6 6 5.2131 1.7523 -1.4224 7 1 4.6340 1.3551 -2.2429 8 6 6.3314 2.5182 -1.6751 9 7 6.6926 2.7655 -2.9153 10 14 7.3335 3.2047 -0.2559 11 1 8.3902 2.2316 0.1202 12 1 7.9634 4.4847 -0.6683 13 1 6.4434 3.4436 0.9085 14 6 3.5449 -0.7095 -0.0015 15 7 2.2952 -1.0852 -0.0009 16 1 -0.3634 0.0000 -1.0277 17 1 -0.3634 -0.8900 0.5138 18 1 -0.3634 0.8900 0.5138 19 1 1.9750 2.1201 0.0010 20 1 4.5963 2.4081 0.5124 21 1 5.6028 0.9400 0.5122 22 1 7.4791 3.3047 -3.0930 23 1 4.4004 -1.3687 -0.0062 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114361357.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:55 Heat of formation + Delta-G solvation = 49.368217 kcal Electronic energy + Delta-G solvation = -8955.099225 eV Core-core repulsion = 7190.162880 eV Total energy + Delta-G solvation = -1764.936345 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.20499 -34.20609 -32.33967 -30.52883 -28.26160 -25.85387 -22.78713 -20.20115 -19.40707 -17.21802 -16.13477 -14.66887 -14.08438 -13.64481 -13.38010 -12.72624 -12.46339 -12.23675 -11.99019 -11.73694 -11.10512 -10.86986 -10.39522 -9.81194 -9.26323 -8.87404 -8.57539 -7.59174 -6.35468 -4.40674 2.91288 3.08481 3.15261 3.17248 3.78716 3.88921 4.13379 4.93271 5.23521 5.66714 5.81639 5.91241 6.09461 6.19088 6.32728 6.36724 6.54365 7.19088 7.24652 7.51254 7.95071 8.24805 8.68845 8.83048 9.19525 10.76776 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.089624 B = 0.012439 C = 0.012169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.343017 B = 2250.523215 C = 2300.364461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.031 4.031 3 C -0.047 4.047 4 N -0.424 5.424 5 C 0.204 3.796 6 C -0.549 4.549 7 H 0.081 0.919 8 C 0.079 3.921 9 N -0.884 5.884 10 Si 0.877 3.123 11 H -0.271 1.271 12 H -0.279 1.279 13 H -0.265 1.265 14 C 0.178 3.822 15 N -0.511 5.511 16 H 0.059 0.941 17 H 0.061 0.939 18 H 0.060 0.940 19 H 0.163 0.837 20 H 0.045 0.955 21 H 0.044 0.956 22 H 0.270 0.730 23 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.841 -1.150 6.756 8.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.161 4.161 3 C -0.184 4.184 4 N -0.101 5.101 5 C 0.083 3.917 6 C -0.587 4.587 7 H 0.100 0.900 8 C -0.126 4.126 9 N -0.520 5.520 10 Si 0.703 3.297 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.189 1.189 14 C -0.105 4.105 15 N -0.231 5.231 16 H 0.078 0.922 17 H 0.080 0.920 18 H 0.079 0.921 19 H 0.180 0.820 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.080 0.920 23 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -4.794 -1.752 6.633 8.370 hybrid contribution 1.125 1.339 0.456 1.807 sum -3.670 -0.414 7.089 7.994 Atomic orbital electron populations 1.19873 0.88639 1.01560 1.01374 1.20549 0.95993 0.89028 1.10510 1.22352 0.83770 0.99907 1.12338 1.45663 1.07439 1.07577 1.49448 1.20126 0.81113 0.90677 0.99804 1.21176 1.12664 1.34598 0.90291 0.90044 1.24855 0.96674 0.95160 0.95875 1.69878 1.25690 1.37754 1.18712 0.86841 0.80952 0.79399 0.82534 1.19595 1.20478 1.18938 1.24682 0.96467 0.82913 1.06458 1.70051 1.00664 1.30696 1.21712 0.92216 0.92025 0.92100 0.81952 0.93658 0.93845 0.91997 0.78717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 10.42 36.01 0.38 -0.47 14 2 C -0.03 -0.60 7.09 -82.85 -0.59 -1.19 14 3 C -0.05 -0.95 11.49 -16.56 -0.19 -1.14 14 4 N -0.42 -9.22 2.73 -119.87 -0.33 -9.54 14 5 C 0.20 4.63 4.97 -5.19 -0.03 4.60 14 6 C -0.55 -14.95 9.94 -34.44 -0.34 -15.29 14 7 H 0.08 2.51 8.06 -52.49 -0.42 2.09 14 8 C 0.08 2.16 5.47 -17.82 -0.10 2.06 14 9 N -0.88 -25.84 13.96 55.43 0.77 -25.07 14 10 Si 0.88 19.66 27.47 -169.99 -4.67 14.99 14 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 14 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 14 13 H -0.26 -5.61 6.54 56.52 0.37 -5.24 14 14 C 0.18 3.69 12.56 -90.38 -1.14 2.55 14 15 N -0.51 -10.86 11.25 -10.87 -0.12 -10.98 14 16 H 0.06 0.84 8.14 -51.93 -0.42 0.42 14 17 H 0.06 0.87 8.14 -51.93 -0.42 0.45 14 18 H 0.06 0.76 8.14 -51.93 -0.42 0.34 14 19 H 0.16 2.87 8.06 -52.49 -0.42 2.45 14 20 H 0.05 1.00 7.20 -51.93 -0.37 0.63 14 21 H 0.04 0.93 7.57 -51.93 -0.39 0.53 14 22 H 0.27 7.31 8.31 -40.82 -0.34 6.97 14 23 H 0.20 3.44 8.06 -52.48 -0.42 3.02 14 LS Contribution 209.79 15.07 3.16 3.16 Total: -1.00 -30.40 209.79 -5.66 -36.06 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -2.47 Total: 0.25 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -2.00 Total: -8.87 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.32 Total: -45.59 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.67 Total: 14.99 kcal Total LS contribution 3.16 Total: 3.16 kcal Total: -30.40 -5.66 -36.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114361357.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.426 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds