Wall clock time and date at job start Mon Mar 30 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34666 * 125.98638 * 2 1 4 4 N 1.36883 * 106.81734 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.40238 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.46950 * 270.00322 * 5 4 3 7 7 H 1.08000 * 120.00114 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99941 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99902 * 179.97438 * 8 6 5 10 10 Si 1.86805 * 120.00140 * 359.97438 * 8 6 5 11 11 H 1.48495 * 109.46922 * 90.00286 * 10 8 6 12 12 H 1.48494 * 109.47149 * 210.00397 * 10 8 6 13 13 H 1.48497 * 109.46875 * 330.00478 * 10 8 6 14 14 C 1.35044 * 107.20248 * 0.02562 * 4 3 2 15 15 N 1.30494 * 108.70229 * 359.97438 * 14 4 3 16 16 H 1.09007 * 109.47112 * 90.00237 * 1 2 3 17 17 H 1.08997 * 109.47343 * 209.99890 * 1 2 3 18 18 H 1.09002 * 109.47391 * 330.00425 * 1 2 3 19 19 H 1.08000 * 126.59672 * 0.06655 * 3 2 1 20 20 H 1.08999 * 109.47008 * 29.99491 * 5 4 3 21 21 H 1.09001 * 109.47545 * 149.99900 * 5 4 3 22 22 H 0.96999 * 119.99605 * 179.97438 * 9 8 6 23 23 H 1.08006 * 125.64918 * 179.73494 * 14 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2983 1.0897 0.0000 4 7 3.5912 0.6402 -0.0006 5 6 4.7996 1.4685 -0.0013 6 6 5.2131 1.7523 -1.4224 7 1 4.6340 1.3551 -2.2429 8 6 6.3314 2.5182 -1.6751 9 7 6.6926 2.7655 -2.9153 10 14 7.3335 3.2047 -0.2559 11 1 8.3902 2.2316 0.1202 12 1 7.9634 4.4847 -0.6683 13 1 6.4434 3.4436 0.9085 14 6 3.5449 -0.7095 -0.0015 15 7 2.2952 -1.0852 -0.0009 16 1 -0.3634 0.0000 -1.0277 17 1 -0.3634 -0.8900 0.5138 18 1 -0.3634 0.8900 0.5138 19 1 1.9750 2.1201 0.0010 20 1 4.5963 2.4081 0.5124 21 1 5.6028 0.9400 0.5122 22 1 7.4791 3.3047 -3.0930 23 1 4.4004 -1.3687 -0.0062 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114361357.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:55 Heat of formation + Delta-G solvation = 30.660846 kcal Electronic energy + Delta-G solvation = -8955.910437 eV Core-core repulsion = 7190.162880 eV Total energy + Delta-G solvation = -1765.747558 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.78421 -36.01277 -34.24186 -31.98232 -30.08492 -27.36327 -24.66030 -21.83039 -20.94868 -19.26804 -17.84101 -16.42637 -15.77516 -15.20848 -14.95036 -14.58313 -13.92806 -13.82123 -13.49737 -13.07459 -12.75441 -12.57693 -12.11539 -11.84309 -10.95445 -10.83462 -10.27416 -9.13307 -8.43536 -6.56438 1.32026 1.35770 1.37105 1.47245 2.22642 2.24914 2.27827 2.89648 3.81736 4.17271 4.30564 4.53960 4.56649 4.65196 4.95757 5.10189 5.17544 5.20453 5.65671 5.93959 6.04450 6.44795 6.53887 7.09215 7.25376 8.72975 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.089624 B = 0.012439 C = 0.012169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.343017 B = 2250.523215 C = 2300.364461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.038 4.038 3 C -0.067 4.067 4 N -0.438 5.438 5 C 0.212 3.788 6 C -0.560 4.560 7 H 0.025 0.975 8 C 0.019 3.981 9 N -0.938 5.938 10 Si 0.957 3.043 11 H -0.258 1.258 12 H -0.280 1.280 13 H -0.238 1.238 14 C 0.166 3.834 15 N -0.531 5.531 16 H 0.067 0.933 17 H 0.068 0.932 18 H 0.087 0.913 19 H 0.183 0.817 20 H 0.061 0.939 21 H 0.065 0.935 22 H 0.274 0.726 23 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.884 -0.704 8.770 10.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.167 4.167 3 C -0.202 4.202 4 N -0.116 5.116 5 C 0.091 3.909 6 C -0.597 4.597 7 H 0.044 0.956 8 C -0.180 4.180 9 N -0.576 5.576 10 Si 0.778 3.222 11 H -0.183 1.183 12 H -0.205 1.205 13 H -0.161 1.161 14 C -0.116 4.116 15 N -0.252 5.252 16 H 0.085 0.915 17 H 0.087 0.913 18 H 0.106 0.894 19 H 0.200 0.800 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.877 -1.324 8.656 10.023 hybrid contribution 1.052 1.139 -0.271 1.574 sum -3.825 -0.185 8.385 9.218 Atomic orbital electron populations 1.20009 0.85518 1.03294 1.02387 1.21317 0.98066 0.88346 1.09017 1.22859 0.83425 1.01244 1.12661 1.45708 1.07676 1.07881 1.50378 1.19968 0.82222 0.91848 0.96904 1.21306 1.12434 1.34637 0.91364 0.95638 1.25910 0.97861 0.95193 0.99086 1.70043 1.26730 1.39054 1.21757 0.85586 0.79283 0.78427 0.78914 1.18289 1.20507 1.16114 1.25238 0.97282 0.83064 1.06052 1.70092 1.01149 1.31560 1.22387 0.91454 0.91280 0.89431 0.80021 0.92138 0.91668 0.91699 0.76619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.49 10.42 71.24 0.74 -0.75 14 2 C -0.04 -1.43 7.09 41.39 0.29 -1.13 14 3 C -0.07 -2.61 11.49 83.09 0.95 -1.66 14 4 N -0.44 -18.58 2.73 -533.15 -1.46 -20.04 14 5 C 0.21 9.27 4.97 85.63 0.43 9.70 14 6 C -0.56 -30.76 9.94 25.60 0.25 -30.50 14 7 H 0.03 1.64 8.06 -2.91 -0.02 1.61 14 8 C 0.02 1.06 5.47 84.65 0.46 1.52 14 9 N -0.94 -55.96 13.96 21.45 0.30 -55.66 14 10 Si 0.96 39.30 27.47 68.60 1.88 41.18 14 11 H -0.26 -10.09 7.11 99.48 0.71 -9.38 14 12 H -0.28 -11.44 7.11 99.48 0.71 -10.73 14 13 H -0.24 -8.71 6.54 99.48 0.65 -8.05 14 14 C 0.17 6.75 12.56 180.26 2.26 9.01 14 15 N -0.53 -22.05 11.25 -188.32 -2.12 -24.17 14 16 H 0.07 1.75 8.14 -2.38 -0.02 1.73 14 17 H 0.07 1.79 8.14 -2.39 -0.02 1.77 14 18 H 0.09 1.92 8.14 -2.39 -0.02 1.90 14 19 H 0.18 6.12 8.06 -2.91 -0.02 6.10 14 20 H 0.06 2.48 7.20 -2.39 -0.02 2.46 14 21 H 0.07 2.58 7.57 -2.39 -0.02 2.57 14 22 H 0.27 15.06 8.31 -92.71 -0.77 14.29 14 23 H 0.22 7.40 8.06 -2.91 -0.02 7.38 14 Total: -1.00 -66.00 209.79 5.14 -60.87 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.13 Total: 11.63 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 5.40 Total: -13.81 kcal Atomic # 7 Polarization: -96.59 SS G_CDS: -3.28 Total: -99.87 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 1.88 Total: 41.18 kcal Total: -66.00 5.14 -60.87 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114361357.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.529 kcal (2) G-P(sol) polarization free energy of solvation -66.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds