Wall clock time and date at job start Mon Mar 30 2020 01:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00096 * 2 1 4 4 H 1.48502 * 109.46982 * 270.00474 * 3 2 1 5 5 H 1.48509 * 109.46699 * 29.99969 * 3 2 1 6 6 H 1.48492 * 109.47577 * 149.99827 * 3 2 1 7 7 C 1.37875 * 120.00533 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00322 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99807 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47343 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47653 * 179.97438 * 10 9 7 12 12 C 1.39869 * 125.90288 * 124.99724 * 11 10 9 13 13 C 1.35312 * 107.91889 * 180.26703 * 12 11 10 14 14 N 1.34951 * 107.74772 * 359.61173 * 13 12 11 15 15 H 0.97001 * 126.03184 * 180.15526 * 14 13 12 16 16 N 1.30837 * 125.89523 * 305.02939 * 11 10 9 17 17 H 0.96998 * 119.99981 * 359.97438 * 1 2 3 18 18 H 1.08994 * 109.47403 * 59.99222 * 9 7 2 19 19 H 1.09003 * 109.46837 * 299.99544 * 9 7 2 20 20 H 1.09006 * 109.47358 * 59.99843 * 10 9 7 21 21 H 1.09002 * 109.47366 * 299.99947 * 10 9 7 22 22 H 1.08002 * 126.03560 * 359.97438 * 12 11 10 23 23 H 1.08008 * 126.12506 * 179.75891 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4921 -4.9672 0.0012 12 6 1.6445 -6.0026 -0.9267 13 6 0.7895 -6.9950 -0.5873 14 7 0.1259 -6.6050 0.5212 15 1 -0.5502 -7.1176 0.9914 16 7 0.5820 -5.3272 0.8695 17 1 -0.4850 0.8400 0.0004 18 1 0.6248 -2.5571 -0.8895 19 1 0.6243 -2.5567 0.8904 20 1 2.8722 -3.6042 0.8905 21 1 2.8721 -3.6043 -0.8895 22 1 2.3214 -6.0071 -1.7683 23 1 0.6627 -7.9323 -1.1087 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117032167.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:55 Heat of formation + Delta-G solvation = 56.763402 kcal Electronic energy + Delta-G solvation = -8777.037209 eV Core-core repulsion = 7012.421543 eV Total energy + Delta-G solvation = -1764.615666 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.61662 -34.03624 -32.04765 -29.50348 -29.31619 -25.23904 -21.83623 -20.62329 -18.78348 -17.72915 -16.14872 -14.45857 -14.20013 -13.62263 -13.13154 -12.75807 -12.46244 -11.83033 -11.02308 -10.89133 -10.57207 -10.27168 -9.89185 -9.40812 -9.03468 -8.66013 -8.28804 -8.25095 -5.91085 -3.93774 2.33556 3.33432 3.34644 3.37835 3.43645 3.47602 4.52947 5.13882 5.33448 5.44411 5.89970 6.14210 6.35618 6.60787 6.69956 6.98586 7.27133 7.67648 7.79513 7.94460 8.11485 8.25624 8.49640 9.13798 9.69412 11.20241 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.121383 B = 0.010078 C = 0.009656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 230.618545 B = 2777.698677 C = 2898.933485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.040 4.040 11 C 0.097 3.903 12 C -0.273 4.273 13 C 0.042 3.958 14 N -0.491 5.491 15 H 0.432 0.568 16 N -0.290 5.290 17 H 0.259 0.741 18 H 0.015 0.985 19 H 0.024 0.976 20 H 0.067 0.933 21 H 0.069 0.931 22 H 0.143 0.857 23 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.906 -11.434 -1.376 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.079 4.079 11 C -0.070 4.070 12 C -0.303 4.303 13 C -0.105 4.105 14 N -0.198 5.198 15 H 0.275 0.725 16 N -0.113 5.113 17 H 0.069 0.931 18 H 0.033 0.967 19 H 0.042 0.958 20 H 0.086 0.914 21 H 0.087 0.913 22 H 0.161 0.839 23 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.121 -10.991 -0.346 11.054 hybrid contribution 0.414 0.289 -0.626 0.804 sum 1.535 -10.702 -0.973 10.855 Atomic orbital electron populations 1.69987 1.06075 1.26455 1.50864 1.25026 0.94825 0.99213 0.95426 0.86593 0.79839 0.83523 0.78018 1.20715 1.21305 1.19853 1.21267 0.93064 0.91022 1.50549 0.92507 1.19053 0.93725 0.90291 0.97822 1.20330 0.97731 0.88335 1.01520 1.22963 0.94590 0.97260 0.92212 1.21525 1.07712 0.95511 1.05571 1.22448 0.96264 1.00422 0.91347 1.46425 1.34805 1.15304 1.23293 0.72527 1.77438 1.16139 0.93669 1.24091 0.93088 0.96657 0.95750 0.91429 0.91271 0.83936 0.81420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.85 13.29 55.43 0.74 -27.11 14 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 14 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 14 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 14 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 14 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 14 7 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 14 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 14 9 C 0.03 0.79 4.93 -27.89 -0.14 0.66 14 10 C -0.04 -0.88 5.73 -27.88 -0.16 -1.04 14 11 C 0.10 1.99 6.49 -82.41 -0.53 1.45 14 12 C -0.27 -4.54 10.72 -40.01 -0.43 -4.97 14 13 C 0.04 0.58 11.99 -17.22 -0.21 0.37 14 14 N -0.49 -7.46 7.36 30.45 0.22 -7.23 14 15 H 0.43 4.81 8.96 -182.61 -1.64 3.17 14 16 N -0.29 -5.99 12.67 33.67 0.43 -5.57 14 17 H 0.26 7.59 8.31 -40.82 -0.34 7.25 14 18 H 0.02 0.44 8.14 -51.93 -0.42 0.02 14 19 H 0.02 0.72 8.14 -51.93 -0.42 0.30 14 20 H 0.07 1.46 8.14 -51.93 -0.42 1.04 14 21 H 0.07 1.41 8.12 -51.93 -0.42 0.99 14 22 H 0.14 2.03 8.06 -52.49 -0.42 1.61 14 23 H 0.17 1.45 8.06 -52.48 -0.42 1.03 14 LS Contribution 212.28 15.07 3.20 3.20 Total: -1.00 -33.76 212.28 -6.03 -39.79 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -3.71 Total: -2.68 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -1.88 Total: -17.47 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 1.39 Total: -39.91 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -33.76 -6.03 -39.79 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117032167.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.554 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds