Wall clock time and date at job start Mon Mar 30 2020 01:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38704 * 126.23070 * 2 1 4 4 N 1.31231 * 109.07997 * 180.27125 * 3 2 1 5 5 N 1.40024 * 109.11002 * 359.72710 * 4 3 2 6 6 C 1.46502 * 126.20424 * 180.02562 * 5 4 3 7 7 C 1.37459 * 107.59447 * 0.02562 * 5 4 3 8 8 C 1.40238 * 126.66039 * 180.02562 * 7 5 4 9 9 H 1.07999 * 120.00310 * 144.99209 * 8 7 5 10 10 C 1.40170 * 119.99608 * 324.99170 * 8 7 5 11 11 N 1.30752 * 120.00417 * 334.52293 * 10 8 7 12 12 Si 1.86805 * 119.99729 * 154.52758 * 10 8 7 13 13 H 1.48501 * 109.47051 * 269.99589 * 12 10 8 14 14 H 1.48493 * 109.47117 * 29.99615 * 12 10 8 15 15 H 1.48498 * 109.47077 * 149.99761 * 12 10 8 16 16 H 1.08994 * 109.47129 * 270.18747 * 1 2 3 17 17 H 1.08997 * 109.47302 * 30.19194 * 1 2 3 18 18 H 1.09002 * 109.46528 * 150.19303 * 1 2 3 19 19 H 1.08002 * 125.45807 * 359.96120 * 3 2 1 20 20 H 1.08999 * 109.47491 * 275.27595 * 6 5 4 21 21 H 1.09004 * 109.47190 * 35.27175 * 6 5 4 22 22 H 1.08999 * 109.47720 * 155.27155 * 6 5 4 23 23 H 0.97005 * 120.00249 * 353.36982 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3268 1.1188 0.0000 4 7 3.5808 0.7319 -0.0059 5 7 3.6287 -0.6676 -0.0037 6 6 4.8397 -1.4920 -0.0080 7 6 2.3334 -1.1276 0.0033 8 6 1.9209 -2.4680 0.0081 9 1 1.0324 -2.7576 0.5494 10 6 2.6619 -3.4317 -0.6897 11 7 3.3977 -3.0776 -1.7108 12 14 2.5980 -5.2222 -0.1607 13 1 3.6672 -5.4821 0.8365 14 1 1.2741 -5.5121 0.4461 15 1 2.8020 -6.0955 -1.3443 16 1 -0.3633 0.0034 1.0276 17 1 -0.3634 0.8882 -0.5168 18 1 -0.3632 -0.8918 -0.5109 19 1 1.9875 2.1442 -0.0006 20 1 5.1884 -1.6201 -1.0328 21 1 5.6150 -1.0018 0.5809 22 1 4.6170 -2.4673 0.4246 23 1 3.3572 -2.1680 -2.0457 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000143448438.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:43 Heat of formation + Delta-G solvation = 49.378503 kcal Electronic energy + Delta-G solvation = -9387.251709 eV Core-core repulsion = 7622.315810 eV Total energy + Delta-G solvation = -1764.935899 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.19290 -34.05165 -31.88191 -29.85323 -27.54442 -24.61929 -23.72489 -19.96320 -18.86092 -17.10893 -14.91883 -14.13501 -13.97158 -13.17047 -12.70268 -12.23914 -12.08290 -11.91940 -11.29734 -11.06235 -10.86863 -10.62626 -10.44176 -9.91819 -8.98110 -8.95039 -7.81892 -7.28594 -6.82142 -4.58430 3.01779 3.14947 3.33660 3.55571 3.99877 4.08447 4.17320 4.96972 5.82837 6.26427 6.33469 6.45360 6.53460 6.75614 6.80952 7.13611 7.26569 7.45668 7.63854 7.91475 8.10699 8.34472 8.71150 9.00705 9.42487 10.03462 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.058094 B = 0.020765 C = 0.016581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.858120 B = 1348.102507 C = 1688.260670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.374 4.374 3 C 0.056 3.944 4 N -0.386 5.386 5 N -0.414 5.414 6 C 0.129 3.871 7 C 0.263 3.737 8 C -0.533 4.533 9 H 0.089 0.911 10 C 0.039 3.961 11 N -0.810 5.810 12 Si 1.069 2.931 13 H -0.276 1.276 14 H -0.276 1.276 15 H -0.277 1.277 16 H 0.028 0.972 17 H 0.034 0.966 18 H 0.046 0.954 19 H 0.148 0.852 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.078 0.922 23 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 -1.658 2.018 2.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.387 4.387 3 C -0.126 4.126 4 N -0.208 5.208 5 N -0.201 5.201 6 C -0.014 4.014 7 C 0.142 3.858 8 C -0.570 4.570 9 H 0.107 0.893 10 C -0.181 4.181 11 N -0.436 5.436 12 Si 0.893 3.107 13 H -0.202 1.202 14 H -0.201 1.201 15 H -0.203 1.203 16 H 0.047 0.953 17 H 0.053 0.947 18 H 0.065 0.935 19 H 0.166 0.834 20 H 0.076 0.924 21 H 0.073 0.927 22 H 0.096 0.904 23 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.041 -2.750 1.669 3.381 hybrid contribution -1.403 1.332 0.247 1.950 sum -0.362 -1.418 1.915 2.410 Atomic orbital electron populations 1.19541 0.91790 0.99454 0.98427 1.19906 0.95009 0.91723 1.32039 1.22832 0.91226 0.97903 1.00629 1.76874 1.20282 0.90379 1.33303 1.48718 1.04879 1.03446 1.63059 1.21496 0.84725 0.93747 1.01446 1.18576 0.82234 0.93790 0.91181 1.19622 1.13597 0.90601 1.33168 0.89348 1.26968 0.91467 1.07096 0.92616 1.70452 1.32741 1.23408 1.16969 0.83580 0.77554 0.72797 0.76788 1.20159 1.20055 1.20261 0.95320 0.94710 0.93531 0.83441 0.92403 0.92714 0.90357 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.74 10.19 36.01 0.37 -0.38 14 2 C -0.37 -9.68 6.21 -103.86 -0.65 -10.33 14 3 C 0.06 1.39 11.87 -17.64 -0.21 1.18 14 4 N -0.39 -10.28 12.54 30.45 0.38 -9.90 14 5 N -0.41 -11.09 3.81 -65.38 -0.25 -11.33 14 6 C 0.13 2.99 9.47 59.85 0.57 3.56 14 7 C 0.26 7.25 5.75 -84.01 -0.48 6.76 14 8 C -0.53 -14.20 8.70 -38.11 -0.33 -14.54 14 9 H 0.09 2.31 7.96 -52.49 -0.42 1.90 14 10 C 0.04 0.97 3.77 -17.29 -0.07 0.90 14 11 N -0.81 -21.20 11.50 55.56 0.64 -20.56 14 12 Si 1.07 21.23 30.00 -169.99 -5.10 16.13 14 13 H -0.28 -5.24 7.11 56.52 0.40 -4.84 14 14 H -0.28 -5.24 7.11 56.52 0.40 -4.84 14 15 H -0.28 -5.47 7.11 56.52 0.40 -5.07 14 16 H 0.03 0.58 8.14 -51.93 -0.42 0.16 14 17 H 0.03 0.66 8.14 -51.93 -0.42 0.24 14 18 H 0.05 1.02 7.97 -51.93 -0.41 0.61 14 19 H 0.15 3.08 8.06 -52.49 -0.42 2.65 14 20 H 0.06 1.34 7.20 -51.93 -0.37 0.97 14 21 H 0.05 1.13 8.14 -51.93 -0.42 0.71 14 22 H 0.08 1.81 6.57 -51.93 -0.34 1.47 14 23 H 0.29 8.12 7.01 -40.82 -0.29 7.83 14 LS Contribution 204.33 15.07 3.08 3.08 Total: -1.00 -29.27 204.33 -4.37 -33.64 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -2.32 Total: 1.78 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -0.80 Total: -12.84 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.77 Total: -41.79 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.10 Total: 16.13 kcal Total LS contribution 3.08 Total: 3.08 kcal Total: -29.27 -4.37 -33.64 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143448438.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.014 kcal (2) G-P(sol) polarization free energy of solvation -29.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds