Wall clock time and date at job start Mon Mar 30 2020 01:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38704 * 126.23070 * 2 1 4 4 N 1.31231 * 109.07997 * 180.27125 * 3 2 1 5 5 N 1.40024 * 109.11002 * 359.72710 * 4 3 2 6 6 C 1.46502 * 126.20424 * 180.02562 * 5 4 3 7 7 C 1.37459 * 107.59447 * 0.02562 * 5 4 3 8 8 C 1.40238 * 126.66039 * 180.02562 * 7 5 4 9 9 H 1.07999 * 120.00310 * 144.99209 * 8 7 5 10 10 C 1.40170 * 119.99608 * 324.99170 * 8 7 5 11 11 N 1.30752 * 120.00417 * 334.52293 * 10 8 7 12 12 Si 1.86805 * 119.99729 * 154.52758 * 10 8 7 13 13 H 1.48501 * 109.47051 * 269.99589 * 12 10 8 14 14 H 1.48493 * 109.47117 * 29.99615 * 12 10 8 15 15 H 1.48498 * 109.47077 * 149.99761 * 12 10 8 16 16 H 1.08994 * 109.47129 * 270.18747 * 1 2 3 17 17 H 1.08997 * 109.47302 * 30.19194 * 1 2 3 18 18 H 1.09002 * 109.46528 * 150.19303 * 1 2 3 19 19 H 1.08002 * 125.45807 * 359.96120 * 3 2 1 20 20 H 1.08999 * 109.47491 * 275.27595 * 6 5 4 21 21 H 1.09004 * 109.47190 * 35.27175 * 6 5 4 22 22 H 1.08999 * 109.47720 * 155.27155 * 6 5 4 23 23 H 0.97005 * 120.00249 * 353.36982 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3268 1.1188 0.0000 4 7 3.5808 0.7319 -0.0059 5 7 3.6287 -0.6676 -0.0037 6 6 4.8397 -1.4920 -0.0080 7 6 2.3334 -1.1276 0.0033 8 6 1.9209 -2.4680 0.0081 9 1 1.0324 -2.7576 0.5494 10 6 2.6619 -3.4317 -0.6897 11 7 3.3977 -3.0776 -1.7108 12 14 2.5980 -5.2222 -0.1607 13 1 3.6672 -5.4821 0.8365 14 1 1.2741 -5.5121 0.4461 15 1 2.8020 -6.0955 -1.3443 16 1 -0.3633 0.0034 1.0276 17 1 -0.3634 0.8882 -0.5168 18 1 -0.3632 -0.8918 -0.5109 19 1 1.9875 2.1442 -0.0006 20 1 5.1884 -1.6201 -1.0328 21 1 5.6150 -1.0018 0.5809 22 1 4.6170 -2.4673 0.4246 23 1 3.3572 -2.1680 -2.0457 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000143448438.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:43 Heat of formation + Delta-G solvation = 30.886515 kcal Electronic energy + Delta-G solvation = -9388.053581 eV Core-core repulsion = 7622.315810 eV Total energy + Delta-G solvation = -1765.737772 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.16170 -36.00421 -33.79337 -31.79198 -29.43910 -26.57797 -25.62739 -21.92089 -20.78716 -19.07895 -16.88545 -15.94819 -15.75895 -15.06665 -14.58755 -14.07698 -13.92002 -13.76093 -13.08465 -12.86521 -12.61378 -12.44072 -11.98259 -11.69941 -10.96732 -10.85460 -9.82885 -9.28555 -8.81080 -6.61936 1.26524 1.54499 1.73713 1.82830 2.18710 2.24931 2.34089 3.00399 3.98560 4.44821 4.49151 4.66935 4.70000 4.95601 5.09478 5.28923 5.35461 5.51577 5.61336 5.89907 6.07482 6.44369 6.73718 7.00298 7.42955 7.99532 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.058094 B = 0.020765 C = 0.016581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.858120 B = 1348.102507 C = 1688.260670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 C -0.395 4.395 3 C 0.053 3.947 4 N -0.408 5.408 5 N -0.427 5.427 6 C 0.130 3.870 7 C 0.229 3.771 8 C -0.555 4.555 9 H 0.086 0.914 10 C 0.009 3.991 11 N -0.818 5.818 12 Si 1.121 2.879 13 H -0.260 1.260 14 H -0.262 1.262 15 H -0.274 1.274 16 H 0.041 0.959 17 H 0.060 0.940 18 H 0.036 0.964 19 H 0.186 0.814 20 H 0.053 0.947 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.337 -2.117 2.515 3.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.408 4.408 3 C -0.128 4.128 4 N -0.231 5.231 5 N -0.214 5.214 6 C -0.012 4.012 7 C 0.108 3.892 8 C -0.591 4.591 9 H 0.104 0.896 10 C -0.206 4.206 11 N -0.443 5.443 12 Si 0.938 3.062 13 H -0.184 1.184 14 H -0.186 1.186 15 H -0.199 1.199 16 H 0.060 0.940 17 H 0.079 0.921 18 H 0.055 0.945 19 H 0.203 0.797 20 H 0.071 0.929 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.670 -3.182 2.166 3.907 hybrid contribution -1.305 1.557 0.084 2.033 sum -0.635 -1.625 2.250 2.847 Atomic orbital electron populations 1.19554 0.89388 1.00244 0.99513 1.20551 0.97043 0.91675 1.31503 1.23428 0.90499 0.99528 0.99313 1.76810 1.21499 0.90562 1.34215 1.48996 1.05473 1.03728 1.63156 1.21550 0.84488 0.93642 1.01524 1.19079 0.83126 0.94889 0.92148 1.19808 1.14288 0.91080 1.33918 0.89615 1.28395 0.89993 1.10737 0.91476 1.70600 1.33728 1.21997 1.17981 0.82946 0.78709 0.67667 0.76904 1.18437 1.18593 1.19875 0.93986 0.92083 0.94523 0.79720 0.92901 0.90463 0.90598 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.22 10.19 71.24 0.73 -0.49 14 2 C -0.40 -20.10 6.21 -19.37 -0.12 -20.22 14 3 C 0.05 2.58 11.87 84.89 1.01 3.59 14 4 N -0.41 -21.45 12.54 -57.58 -0.72 -22.17 14 5 N -0.43 -22.77 3.81 -360.75 -1.37 -24.15 14 6 C 0.13 6.02 9.47 127.77 1.21 7.23 14 7 C 0.23 12.59 5.75 39.12 0.22 12.82 14 8 C -0.55 -29.48 8.70 23.23 0.20 -29.28 14 9 H 0.09 4.48 7.96 -2.91 -0.02 4.45 14 10 C 0.01 0.47 3.77 85.32 0.32 0.79 14 11 N -0.82 -42.79 11.50 21.87 0.25 -42.54 14 12 Si 1.12 41.36 30.00 68.60 2.06 43.41 14 13 H -0.26 -8.90 7.11 99.48 0.71 -8.20 14 14 H -0.26 -9.03 7.11 99.48 0.71 -8.32 14 15 H -0.27 -9.92 7.11 99.48 0.71 -9.21 14 16 H 0.04 1.62 8.14 -2.39 -0.02 1.61 14 17 H 0.06 2.20 8.14 -2.39 -0.02 2.18 14 18 H 0.04 1.57 7.97 -2.39 -0.02 1.55 14 19 H 0.19 7.20 8.06 -2.91 -0.02 7.18 14 20 H 0.05 2.47 7.20 -2.39 -0.02 2.45 14 21 H 0.08 3.14 8.14 -2.38 -0.02 3.12 14 22 H 0.08 3.49 6.57 -2.39 -0.02 3.47 14 23 H 0.27 15.33 7.01 -92.70 -0.65 14.68 14 Total: -1.00 -61.16 204.33 5.10 -56.06 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.31 Total: 14.96 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 3.57 Total: -25.57 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -1.84 Total: -88.86 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.06 Total: 43.41 kcal Total: -61.16 5.10 -56.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143448438.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.947 kcal (2) G-P(sol) polarization free energy of solvation -61.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds