Wall clock time and date at job start Mon Mar 30 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39099 * 126.80860 * 2 1 4 4 C 1.41226 * 126.44165 * 359.95106 * 3 2 1 5 5 H 1.08001 * 120.00066 * 0.02562 * 4 3 2 6 6 C 1.39709 * 119.99828 * 180.02562 * 4 3 2 7 7 N 1.31014 * 120.00160 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99932 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47144 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47025 * 120.00020 * 8 6 4 11 11 H 1.48497 * 109.47267 * 240.00244 * 8 6 4 12 12 N 1.35967 * 107.11533 * 179.97438 * 3 2 1 13 13 C 1.30156 * 109.13693 * 359.72341 * 12 3 2 14 14 N 1.35970 * 109.59183 * 0.44578 * 13 12 3 15 15 C 1.46499 * 126.10926 * 179.81432 * 14 13 12 16 16 H 1.08994 * 109.47460 * 270.02680 * 1 2 3 17 17 H 1.08999 * 109.46887 * 30.03086 * 1 2 3 18 18 H 1.09000 * 109.46198 * 150.03064 * 1 2 3 19 19 H 0.97003 * 120.00465 * 180.02562 * 7 6 4 20 20 H 1.07999 * 125.20746 * 180.26436 * 13 12 3 21 21 H 1.09002 * 109.47391 * 269.69314 * 15 14 13 22 22 H 1.09001 * 109.46813 * 149.69371 * 15 14 13 23 23 H 1.09004 * 109.47041 * 29.69498 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3404 1.1137 0.0000 4 6 1.9334 2.4660 -0.0010 5 1 0.8822 2.7136 -0.0014 6 6 2.8907 3.4836 -0.0014 7 7 4.1660 3.1833 -0.0014 8 14 2.3524 5.2724 -0.0019 9 1 0.8691 5.3429 -0.0012 10 1 2.8802 5.9485 1.2103 11 1 2.8800 5.9477 -1.2147 12 7 3.6206 0.6555 0.0006 13 6 3.6080 -0.6460 0.0069 14 7 2.3226 -1.0895 0.0007 15 6 1.8925 -2.4899 0.0009 16 1 -0.3634 0.0005 1.0276 17 1 -0.3633 0.8897 -0.5143 18 1 -0.3632 -0.8903 -0.5134 19 1 4.8307 3.8898 -0.0013 20 1 4.4843 -1.2772 0.0129 21 1 1.7862 -2.8376 -1.0267 22 1 0.9349 -2.5758 0.5144 23 1 2.6365 -3.0984 0.5152 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164633156.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:57 Heat of formation + Delta-G solvation = 29.382248 kcal Electronic energy + Delta-G solvation = -9184.135317 eV Core-core repulsion = 7418.332315 eV Total energy + Delta-G solvation = -1765.803002 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.77714 -35.47678 -33.85882 -32.25124 -28.77471 -27.16607 -25.56639 -21.79264 -20.17505 -18.57037 -17.00322 -16.38429 -16.05553 -15.01019 -14.40055 -13.90030 -13.78323 -13.15654 -13.06313 -12.93154 -12.77512 -12.52418 -12.22581 -11.70109 -11.07864 -9.91551 -9.72833 -8.78898 -8.17250 -5.99453 1.35245 1.42803 1.58481 1.74485 2.36335 2.61899 2.71531 3.77397 4.24334 4.30314 4.55959 4.58234 4.67939 4.74933 4.98283 5.15869 5.33785 5.58250 5.97715 6.15142 6.45134 6.99343 7.20899 7.37430 8.16513 8.79756 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.082332 B = 0.015970 C = 0.013507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.005722 B = 1752.867726 C = 2072.426558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 C -0.198 4.198 3 C 0.139 3.861 4 C -0.489 4.489 5 H 0.077 0.923 6 C 0.020 3.980 7 N -0.823 5.823 8 Si 0.980 3.020 9 H -0.255 1.255 10 H -0.273 1.273 11 H -0.273 1.273 12 N -0.518 5.518 13 C 0.128 3.872 14 N -0.470 5.470 15 C 0.080 3.920 16 H 0.051 0.949 17 H 0.055 0.945 18 H 0.065 0.935 19 H 0.267 0.733 20 H 0.211 0.789 21 H 0.073 0.927 22 H 0.083 0.917 23 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 -6.794 0.057 8.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.308 4.308 3 C 0.014 3.986 4 C -0.524 4.524 5 H 0.095 0.905 6 C -0.193 4.193 7 N -0.451 5.451 8 Si 0.802 3.198 9 H -0.179 1.179 10 H -0.198 1.198 11 H -0.198 1.198 12 N -0.241 5.241 13 C -0.153 4.153 14 N -0.160 5.160 15 C -0.062 4.062 16 H 0.069 0.931 17 H 0.074 0.926 18 H 0.084 0.916 19 H 0.076 0.924 20 H 0.228 0.772 21 H 0.091 0.909 22 H 0.102 0.898 23 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.068 -6.398 0.050 7.582 hybrid contribution -0.450 0.233 -0.008 0.507 sum -4.518 -6.165 0.041 7.644 Atomic orbital electron populations 1.19627 0.86904 1.01420 1.00566 1.21593 0.94383 0.86725 1.28142 1.18837 0.87232 0.93570 0.98919 1.18862 0.93842 0.89457 1.50264 0.90522 1.26711 0.94516 1.05055 0.92976 1.70268 1.01726 1.34426 1.38698 0.85201 0.79487 0.76944 0.78147 1.17876 1.19791 1.19786 1.71041 1.23861 1.07382 1.21825 1.25531 0.87708 0.92870 1.09161 1.44928 1.06258 1.06814 1.58004 1.21993 1.02397 0.78539 1.03248 0.93062 0.92593 0.91584 0.92383 0.77221 0.90856 0.89850 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -1.06 9.76 71.24 0.70 -0.37 14 2 C -0.20 -9.85 7.08 42.11 0.30 -9.55 14 3 C 0.14 8.35 6.69 39.44 0.26 8.61 14 4 C -0.49 -29.60 9.12 23.36 0.21 -29.39 14 5 H 0.08 4.37 7.35 -2.91 -0.02 4.34 14 6 C 0.02 1.17 5.49 85.17 0.47 1.64 14 7 N -0.82 -50.86 11.94 21.79 0.26 -50.60 14 8 Si 0.98 43.60 29.56 68.60 2.03 45.63 14 9 H -0.26 -10.75 7.11 99.48 0.71 -10.04 14 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 14 11 H -0.27 -11.69 7.11 99.48 0.71 -10.99 14 12 N -0.52 -31.09 9.51 -191.84 -1.82 -32.92 14 13 C 0.13 6.09 12.52 180.06 2.25 8.34 14 14 N -0.47 -20.04 3.15 -534.03 -1.68 -21.72 14 15 C 0.08 2.17 10.84 127.77 1.38 3.56 14 16 H 0.05 1.87 8.14 -2.39 -0.02 1.85 14 17 H 0.06 2.25 7.61 -2.39 -0.02 2.23 14 18 H 0.07 2.10 7.84 -2.39 -0.02 2.09 14 19 H 0.27 15.10 8.30 -92.71 -0.77 14.33 14 20 H 0.21 7.87 8.06 -2.91 -0.02 7.84 14 21 H 0.07 1.74 8.14 -2.39 -0.02 1.72 14 22 H 0.08 2.01 7.77 -2.39 -0.02 1.99 14 23 H 0.10 2.09 8.14 -2.38 -0.02 2.07 14 Total: -1.00 -75.87 208.32 5.55 -70.31 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 1.19 Total: 6.45 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: 5.58 Total: -17.16 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -3.24 Total: -105.23 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -75.87 5.55 -70.31 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164633156.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.696 kcal (2) G-P(sol) polarization free energy of solvation -75.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds