Wall clock time and date at job start Mon Mar 30 2020 01:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86800 * 120.00090 * 2 1 4 4 H 1.48492 * 109.47086 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47276 * 300.00769 * 3 2 1 6 6 H 1.48496 * 109.46802 * 60.00404 * 3 2 1 7 7 C 1.40017 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00207 * 162.32367 * 7 2 1 9 9 C 1.41364 * 119.99860 * 342.32578 * 7 2 1 10 10 C 1.35887 * 119.95906 * 332.95622 * 9 7 2 11 11 C 1.50134 * 122.75406 * 180.62470 * 10 9 7 12 12 C 1.52743 * 111.14948 * 337.71670 * 11 10 9 13 13 C 1.53491 * 109.26782 * 53.60306 * 12 11 10 14 14 C 1.47991 * 119.95620 * 152.97969 * 9 7 2 15 15 O 1.21225 * 121.21211 * 348.39501 * 14 9 7 16 16 H 0.97004 * 120.00102 * 359.97438 * 1 2 3 17 17 H 1.07997 * 118.63169 * 0.60729 * 10 9 7 18 18 H 1.09010 * 109.19064 * 217.27335 * 11 10 9 19 19 H 1.08994 * 109.12841 * 98.12741 * 11 10 9 20 20 H 1.08996 * 109.51012 * 293.65483 * 12 11 10 21 21 H 1.08995 * 109.51346 * 173.55014 * 12 11 10 22 22 H 1.09005 * 109.86983 * 56.45806 * 13 12 11 23 23 H 1.09001 * 109.87156 * 177.44372 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7019 1.3464 -0.0006 5 1 1.8831 2.3965 -1.2124 6 1 1.8833 2.3963 1.2125 7 6 2.0080 -1.2126 -0.0005 8 1 3.0498 -1.2346 -0.2845 9 6 1.3512 -2.4081 0.3706 10 6 0.2900 -2.3643 1.2182 11 6 -0.4446 -3.5953 1.6643 12 6 -0.2398 -4.7460 0.6809 13 6 1.2638 -4.9664 0.4652 14 6 1.8205 -3.7058 -0.1641 15 8 2.6210 -3.7582 -1.0729 16 1 -0.4850 0.8401 0.0004 17 1 -0.0387 -1.4038 1.5868 18 1 -1.5091 -3.3713 1.7354 19 1 -0.0772 -3.8945 2.6459 20 1 -0.7119 -4.5003 -0.2703 21 1 -0.6865 -5.6543 1.0852 22 1 1.7524 -5.1498 1.4222 23 1 1.4221 -5.8151 -0.2002 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167341394.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:18 Heat of formation + Delta-G solvation = -62.268571 kcal Electronic energy + Delta-G solvation = -9217.045146 eV Core-core repulsion = 7414.975116 eV Total energy + Delta-G solvation = -1802.070031 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.073 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.31062 -37.09891 -35.45478 -31.67286 -29.62675 -26.82746 -23.16619 -22.29071 -19.70722 -17.92227 -17.05225 -16.30447 -15.63904 -15.41638 -14.84754 -14.24170 -13.80566 -13.56943 -13.14480 -12.97751 -12.61461 -12.10372 -11.87808 -11.74042 -11.36111 -10.97965 -10.15395 -9.45534 -8.51541 -6.25363 0.67712 1.33975 1.35679 1.50165 2.25287 2.32056 3.26689 3.59990 4.13207 4.25803 4.36426 4.79499 4.84690 4.99855 5.06786 5.21175 5.28103 5.45223 5.47048 6.01257 6.17670 6.44279 6.94464 7.13101 7.14505 8.47699 Molecular weight = 166.07amu Principal moments of inertia in cm(-1) A = 0.067229 B = 0.017481 C = 0.014655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.388032 B = 1601.319319 C = 1910.103282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.028 3.972 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.496 4.496 8 H 0.048 0.952 9 C -0.076 4.076 10 C -0.237 4.237 11 C -0.067 4.067 12 C -0.101 4.101 13 C -0.153 4.153 14 C 0.376 3.624 15 O -0.525 6.525 16 H 0.282 0.718 17 H 0.088 0.912 18 H 0.061 0.939 19 H 0.075 0.925 20 H 0.044 0.956 21 H 0.106 0.894 22 H 0.115 0.885 23 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.942 -4.414 4.196 6.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.182 4.182 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.527 4.527 8 H 0.066 0.934 9 C -0.078 4.078 10 C -0.260 4.260 11 C -0.103 4.103 12 C -0.139 4.139 13 C -0.191 4.191 14 C 0.260 3.740 15 O -0.407 6.407 16 H 0.092 0.908 17 H 0.106 0.894 18 H 0.079 0.921 19 H 0.093 0.907 20 H 0.063 0.937 21 H 0.124 0.876 22 H 0.133 0.867 23 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.732 -4.305 3.713 5.943 hybrid contribution 0.362 1.090 -0.299 1.187 sum -1.370 -3.215 3.414 4.886 Atomic orbital electron populations 1.69825 1.08350 1.29532 1.39031 1.26471 0.95604 1.03660 0.92501 0.85298 0.79071 0.77164 0.78961 1.19269 1.19372 1.18347 1.19445 0.97195 0.93053 1.43013 0.93378 1.19314 0.98716 0.92373 0.97388 1.23182 1.02513 0.98086 1.02250 1.20183 0.99105 0.92536 0.98505 1.21510 0.93299 0.99624 0.99431 1.22320 0.98477 0.95127 1.03149 1.24319 0.76492 0.93506 0.79726 1.90307 1.31138 1.90880 1.28326 0.90785 0.89370 0.92054 0.90705 0.93725 0.87591 0.86687 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.58 11.08 21.84 0.24 -46.33 14 2 C 0.03 1.57 5.07 85.28 0.43 2.00 14 3 Si 0.97 42.29 29.60 68.60 2.03 44.32 14 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 14 5 H -0.27 -11.19 7.11 99.48 0.71 -10.48 14 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 14 7 C -0.50 -29.56 8.76 23.47 0.21 -29.35 14 8 H 0.05 2.96 7.90 -2.91 -0.02 2.94 14 9 C -0.08 -4.19 5.60 -20.47 -0.11 -4.30 14 10 C -0.24 -11.83 8.79 24.96 0.22 -11.61 14 11 C -0.07 -2.44 6.02 29.59 0.18 -2.26 14 12 C -0.10 -3.26 5.93 30.67 0.18 -3.07 14 13 C -0.15 -5.37 6.20 30.27 0.19 -5.18 14 14 C 0.38 18.69 6.92 28.53 0.20 18.89 14 15 O -0.53 -29.37 17.51 -2.86 -0.05 -29.42 14 16 H 0.28 14.18 8.30 -92.71 -0.77 13.41 14 17 H 0.09 4.85 6.06 -2.91 -0.02 4.83 14 18 H 0.06 2.11 8.14 -2.38 -0.02 2.09 14 19 H 0.07 2.37 8.14 -2.39 -0.02 2.36 14 20 H 0.04 1.58 8.14 -2.39 -0.02 1.56 14 21 H 0.11 2.45 8.14 -2.39 -0.02 2.43 14 22 H 0.12 3.46 8.14 -2.38 -0.02 3.44 14 23 H 0.09 2.91 8.14 -2.39 -0.02 2.89 14 Total: -1.00 -66.60 203.89 4.90 -61.70 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.19 Total: 4.63 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 1.49 Total: -34.89 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.24 Total: -46.33 kcal Atomic # 8 Polarization: -29.37 SS G_CDS: -0.05 Total: -29.42 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -66.60 4.90 -61.70 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167341394.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.572 kcal (2) G-P(sol) polarization free energy of solvation -66.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds