Wall clock time and date at job start Mon Mar 30 2020 01:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99625 * 2 1 4 4 H 1.48503 * 109.47273 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47070 * 239.99685 * 3 2 1 6 6 H 1.48501 * 109.47186 * 119.99798 * 3 2 1 7 7 C 1.37871 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99785 * 18.51815 * 7 2 1 9 9 C 1.50707 * 120.00178 * 198.52165 * 7 2 1 10 10 H 1.09004 * 109.54254 * 305.67293 * 9 7 2 11 11 C 1.52794 * 109.54689 * 65.85672 * 9 7 2 12 12 C 1.50006 * 111.14967 * 172.52052 * 11 9 7 13 13 C 1.32740 * 123.22970 * 338.23588 * 12 11 9 14 14 C 1.46669 * 120.61230 * 0.33663 * 13 12 11 15 15 O 1.21324 * 121.13281 * 168.55266 * 14 13 12 16 16 C 1.51496 * 117.74126 * 348.57478 * 14 13 12 17 17 H 0.97006 * 119.99490 * 174.64261 * 1 2 3 18 18 H 1.09003 * 109.14202 * 293.05033 * 11 9 7 19 19 H 1.09002 * 109.14279 * 52.17983 * 11 9 7 20 20 H 1.07998 * 118.36697 * 158.11770 * 12 11 9 21 21 H 1.08000 * 119.69880 * 180.31983 * 13 12 11 22 22 H 1.08998 * 109.89002 * 282.48138 * 16 14 13 23 23 H 1.09001 * 109.89219 * 161.37096 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6965 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.5066 -2.1052 -0.2961 9 6 3.4531 -1.2275 0.4151 10 1 4.0197 -0.5121 -0.1810 11 6 3.5698 -0.8657 1.8950 12 6 4.9715 -1.0628 2.3915 13 6 5.8488 -1.8610 1.7955 14 6 5.4812 -2.6034 0.5852 15 8 6.3210 -3.1697 -0.0827 16 6 4.0172 -2.6388 0.1970 17 1 -0.4850 -0.8365 -0.0784 18 1 3.2840 0.1773 2.0316 19 1 2.8953 -1.4985 2.4720 20 1 5.2825 -0.5274 3.2764 21 1 6.8427 -1.9645 2.2054 22 1 3.4842 -3.3525 0.8251 23 1 3.9183 -2.9198 -0.8515 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000207073194.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:34 Heat of formation + Delta-G solvation = -37.480080 kcal Electronic energy + Delta-G solvation = -9196.696349 eV Core-core repulsion = 7395.701228 eV Total energy + Delta-G solvation = -1800.995121 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.073 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.04784 -36.11831 -32.83908 -30.60072 -28.12891 -24.73920 -21.59040 -20.40009 -17.65798 -17.11610 -15.77182 -14.61619 -14.16348 -13.91789 -13.38614 -12.72652 -12.34524 -12.19248 -11.90970 -10.87360 -10.67761 -10.34915 -10.00433 -9.84082 -9.14093 -8.82041 -8.79062 -8.27042 -6.55252 -4.18114 1.56703 3.27118 3.37876 3.41050 3.54067 4.39429 4.80798 5.13507 5.26319 5.56220 5.95950 5.97876 6.08322 6.34913 6.44148 6.61792 6.70438 6.90714 7.07359 7.30907 7.96824 8.12459 8.28359 8.80028 9.50925 10.83934 Molecular weight = 166.07amu Principal moments of inertia in cm(-1) A = 0.064554 B = 0.017325 C = 0.015838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.642066 B = 1615.738947 C = 1767.510295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.032 3.968 3 Si 1.044 2.956 4 H -0.284 1.284 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.603 4.603 8 H 0.059 0.941 9 C 0.029 3.971 10 H 0.027 0.973 11 C -0.122 4.122 12 C -0.051 4.051 13 C -0.261 4.261 14 C 0.387 3.613 15 O -0.487 6.487 16 C -0.147 4.147 17 H 0.269 0.731 18 H 0.081 0.919 19 H 0.087 0.913 20 H 0.108 0.892 21 H 0.120 0.880 22 H 0.090 0.910 23 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.026 0.035 4.654 8.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.174 4.174 3 Si 0.873 3.127 4 H -0.210 1.210 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.640 4.640 8 H 0.078 0.922 9 C 0.009 3.991 10 H 0.045 0.955 11 C -0.159 4.159 12 C -0.070 4.070 13 C -0.280 4.280 14 C 0.268 3.732 15 O -0.365 6.365 16 C -0.185 4.185 17 H 0.079 0.921 18 H 0.100 0.900 19 H 0.105 0.895 20 H 0.126 0.874 21 H 0.138 0.862 22 H 0.108 0.892 23 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.229 1.390 4.373 8.562 hybrid contribution 0.186 -1.615 0.086 1.628 sum 7.415 -0.225 4.458 8.655 Atomic orbital electron populations 1.70863 1.06961 1.31084 1.44581 1.25792 0.96143 1.02462 0.92994 0.84041 0.75403 0.75889 0.77363 1.21010 1.20823 1.20050 1.21930 0.94721 0.96555 1.50833 0.92235 1.19028 0.97868 0.91035 0.91129 0.95547 1.21412 0.91118 1.03279 1.00057 1.23942 0.95888 0.91580 0.95568 1.23025 1.00710 1.04160 1.00136 1.23281 0.91814 0.75060 0.83013 1.90450 1.54690 1.38848 1.52560 1.22317 0.91932 1.01393 1.02810 0.92083 0.90047 0.89533 0.87448 0.86247 0.89233 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.70 55.43 0.76 -25.83 14 2 C 0.03 0.88 5.34 -17.82 -0.10 0.78 14 3 Si 1.04 23.97 26.48 -169.99 -4.50 19.47 14 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 14 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 14 6 H -0.27 -5.62 5.51 56.52 0.31 -5.31 14 7 C -0.60 -16.08 8.81 -34.44 -0.30 -16.39 14 8 H 0.06 1.71 8.00 -52.49 -0.42 1.29 14 9 C 0.03 0.65 1.71 -91.59 -0.16 0.49 14 10 H 0.03 0.61 6.78 -51.93 -0.35 0.26 14 11 C -0.12 -2.39 5.01 -28.32 -0.14 -2.53 14 12 C -0.05 -0.83 10.00 -36.52 -0.37 -1.19 14 13 C -0.26 -4.44 10.04 -38.06 -0.38 -4.82 14 14 C 0.39 7.68 6.93 -30.52 -0.21 7.47 14 15 O -0.49 -10.74 17.93 5.52 0.10 -10.64 14 16 C -0.15 -3.02 5.45 -27.21 -0.15 -3.17 14 17 H 0.27 7.90 8.73 -40.82 -0.36 7.55 14 18 H 0.08 1.63 4.89 -51.93 -0.25 1.38 14 19 H 0.09 1.69 8.12 -51.93 -0.42 1.26 14 20 H 0.11 1.39 8.06 -52.49 -0.42 0.97 14 21 H 0.12 1.78 8.06 -52.49 -0.42 1.35 14 22 H 0.09 1.74 8.14 -51.93 -0.42 1.32 14 23 H 0.08 1.72 8.14 -51.93 -0.42 1.29 14 LS Contribution 200.02 15.07 3.01 3.01 Total: -1.00 -29.28 200.02 -4.81 -34.09 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -2.38 Total: -0.74 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -1.80 Total: -19.36 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.76 Total: -25.83 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.10 Total: -10.64 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.50 Total: 19.47 kcal Total LS contribution 3.01 Total: 3.01 kcal Total: -29.28 -4.81 -34.09 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000207073194.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.389 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds