Wall clock time and date at job start Mon Mar 30 2020 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32246 * 119.42268 * 2 1 4 4 N 1.28643 * 121.87379 * 180.02562 * 3 2 1 5 5 C 1.32037 * 120.56356 * 359.72871 * 4 3 2 6 6 C 1.41000 * 118.82540 * 0.52315 * 5 4 3 7 7 C 1.41500 * 120.85259 * 179.76011 * 6 5 4 8 8 H 1.08007 * 120.00076 * 155.77153 * 7 6 5 9 9 C 1.40144 * 120.00225 * 335.49744 * 7 6 5 10 10 N 1.30657 * 119.99847 * 343.18097 * 9 7 6 11 11 Si 1.86798 * 120.00101 * 163.17569 * 9 7 6 12 12 H 1.48501 * 109.47099 * 94.57284 * 11 9 7 13 13 H 1.48498 * 109.47011 * 214.57161 * 11 9 7 14 14 H 1.48500 * 109.47141 * 334.57262 * 11 9 7 15 15 N 1.31636 * 119.42465 * 180.02562 * 2 1 3 16 16 H 1.08996 * 109.47171 * 269.97256 * 1 2 3 17 17 H 1.08997 * 109.47216 * 29.97313 * 1 2 3 18 18 H 1.09000 * 109.47155 * 149.97425 * 1 2 3 19 19 H 1.08000 * 120.58340 * 180.28344 * 5 4 3 20 20 H 0.96996 * 120.00171 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1567 1.1519 0.0000 4 7 3.4419 1.2069 -0.0005 5 6 4.1614 0.0997 0.0044 6 6 3.4960 -1.1434 -0.0012 7 6 4.2245 -2.3564 -0.0014 8 1 3.7699 -3.2595 0.3786 9 6 5.5339 -2.3873 -0.4999 10 7 5.9694 -1.4125 -1.2530 11 14 6.6567 -3.8221 -0.0874 12 1 6.5878 -4.8326 -1.1733 13 1 8.0530 -3.3350 0.0476 14 1 6.2219 -4.4392 1.1914 15 7 2.1537 -1.1466 -0.0005 16 1 -0.3633 -0.0005 1.0276 17 1 -0.3633 0.8902 -0.5134 18 1 -0.3633 -0.8897 -0.5142 19 1 5.2404 0.1456 0.0086 20 1 6.8756 -1.4340 -1.5984 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213573194.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:23 Heat of formation + Delta-G solvation = 21.498750 kcal Electronic energy + Delta-G solvation = -8778.910783 eV Core-core repulsion = 6974.651495 eV Total energy + Delta-G solvation = -1804.259288 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 165.060 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.60236 -36.55811 -35.13104 -33.48815 -29.34568 -28.99593 -24.92805 -23.67681 -19.67932 -18.88771 -17.15518 -16.45831 -16.04285 -15.79493 -14.48449 -13.77497 -13.51905 -13.35782 -13.14766 -12.89385 -12.29311 -12.03357 -11.87794 -11.70593 -11.14855 -10.34894 -9.50187 -9.06001 -7.07163 0.40121 0.56542 1.39316 1.50121 1.60650 2.12246 2.45321 3.39549 3.57376 3.75880 4.15491 4.61592 4.77337 4.81105 4.90001 5.03753 5.23787 5.47130 5.95482 6.23984 6.29584 7.02577 7.92609 8.35835 Molecular weight = 165.06amu Principal moments of inertia in cm(-1) A = 0.093839 B = 0.015415 C = 0.013704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 298.312341 B = 1815.992855 C = 2042.752482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.247 3.753 3 N -0.440 5.440 4 N -0.252 5.252 5 C -0.046 4.046 6 C 0.209 3.791 7 C -0.407 4.407 8 H 0.104 0.896 9 C 0.038 3.962 10 N -0.788 5.788 11 Si 1.015 2.985 12 H -0.255 1.255 13 H -0.255 1.255 14 H -0.251 1.251 15 N -0.602 5.602 16 H 0.093 0.907 17 H 0.088 0.912 18 H 0.086 0.914 19 H 0.169 0.831 20 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.202 -4.862 1.214 5.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.025 4.025 3 N -0.290 5.290 4 N -0.089 5.089 5 C -0.230 4.230 6 C 0.077 3.923 7 C -0.444 4.444 8 H 0.122 0.878 9 C -0.185 4.185 10 N -0.412 5.412 11 Si 0.832 3.168 12 H -0.179 1.179 13 H -0.178 1.178 14 H -0.175 1.175 15 N -0.332 5.332 16 H 0.112 0.888 17 H 0.107 0.893 18 H 0.104 0.896 19 H 0.186 0.814 20 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.707 -3.749 1.067 3.962 hybrid contribution 0.992 -0.939 -0.095 1.369 sum 1.699 -4.688 0.972 5.080 Atomic orbital electron populations 1.20431 0.83728 1.03961 1.04142 1.25045 1.00688 0.86736 0.90013 1.73107 1.01834 1.26095 1.28001 1.72844 1.01169 1.28127 1.06774 1.25082 1.02457 0.91185 1.04279 1.19897 0.89196 0.95211 0.88033 1.20035 0.97241 0.95041 1.32065 0.87829 1.27307 0.98895 1.01468 0.90851 1.69679 1.19997 1.32354 1.19205 0.84696 0.76123 0.75611 0.80388 1.17891 1.17832 1.17465 1.69394 1.08679 1.28862 1.26236 0.88843 0.89286 0.89571 0.81436 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.31 10.34 71.24 0.74 -1.58 14 2 C 0.25 12.62 7.71 138.66 1.07 13.68 14 3 N -0.44 -24.18 11.45 -51.43 -0.59 -24.77 14 4 N -0.25 -14.40 11.61 -55.63 -0.65 -15.05 14 5 C -0.05 -2.57 10.04 85.34 0.86 -1.71 14 6 C 0.21 11.70 6.44 40.26 0.26 11.96 14 7 C -0.41 -20.62 9.33 23.54 0.22 -20.40 14 8 H 0.10 5.00 7.91 -2.91 -0.02 4.98 14 9 C 0.04 1.66 5.19 85.33 0.44 2.11 14 10 N -0.79 -36.56 10.95 21.85 0.24 -36.32 14 11 Si 1.02 32.11 29.59 68.60 2.03 34.14 14 12 H -0.25 -7.71 7.11 99.48 0.71 -7.01 14 13 H -0.25 -7.45 7.11 99.48 0.71 -6.75 14 14 H -0.25 -7.83 7.11 99.48 0.71 -7.13 14 15 N -0.60 -33.11 10.43 -180.94 -1.89 -35.00 14 16 H 0.09 2.97 8.14 -2.39 -0.02 2.95 14 17 H 0.09 2.91 8.14 -2.39 -0.02 2.89 14 18 H 0.09 2.88 8.14 -2.39 -0.02 2.86 14 19 H 0.17 9.02 6.24 -2.91 -0.02 9.00 14 20 H 0.31 12.42 8.29 -92.71 -0.77 11.65 14 Total: -1.00 -63.48 191.27 3.98 -59.50 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.25 Total: 13.45 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 3.58 Total: 4.06 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -2.88 Total: -111.14 kcal Atomic # 14 Polarization: 32.11 SS G_CDS: 2.03 Total: 34.14 kcal Total: -63.48 3.98 -59.50 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213573194.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.994 kcal (2) G-P(sol) polarization free energy of solvation -63.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds