Wall clock time and date at job start Mon Mar 30 2020 01:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39214 * 120.53021 * 2 1 4 4 N 1.32517 * 119.43508 * 180.27852 * 3 2 1 5 5 N 1.28756 * 120.52015 * 359.47527 * 4 3 2 6 6 C 1.33633 * 121.13008 * 0.53065 * 5 4 3 7 7 C 1.41548 * 119.72999 * 179.71230 * 6 5 4 8 8 H 1.08003 * 119.99861 * 180.02562 * 7 6 5 9 9 C 1.40088 * 120.00070 * 0.02562 * 7 6 5 10 10 N 1.30680 * 119.99895 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00113 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47174 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47586 * 119.99865 * 11 9 7 14 14 H 1.48502 * 109.46806 * 239.99829 * 11 9 7 15 15 N 1.32003 * 120.53309 * 180.02562 * 2 1 3 16 16 H 1.08995 * 109.47629 * 90.00143 * 1 2 3 17 17 H 1.09002 * 109.47172 * 210.00409 * 1 2 3 18 18 H 1.09000 * 109.47336 * 330.00062 * 1 2 3 19 19 H 1.08002 * 120.27966 * 359.97438 * 3 2 1 20 20 H 0.96999 * 119.99890 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2142 1.1991 0.0000 4 7 3.5391 1.1738 -0.0056 5 7 4.1717 0.0524 -0.0009 6 6 3.5148 -1.1114 -0.0008 7 6 4.2401 -2.3268 -0.0017 8 1 3.7137 -3.2699 -0.0021 9 6 5.6409 -2.3066 -0.0021 10 7 6.2779 -1.1656 -0.0021 11 14 6.5981 -3.9107 -0.0040 12 1 5.6495 -5.0533 -0.0042 13 1 7.4526 -3.9759 -1.2167 14 1 7.4533 -3.9782 1.2082 15 7 2.1776 -1.1370 -0.0005 16 1 -0.3634 0.0000 -1.0276 17 1 -0.3633 -0.8900 0.5139 18 1 -0.3634 0.8900 0.5138 19 1 1.6874 2.1420 -0.0004 20 1 7.2477 -1.1516 -0.0028 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213573361.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:21 Heat of formation + Delta-G solvation = 54.767955 kcal Electronic energy + Delta-G solvation = -8781.428720 eV Core-core repulsion = 6978.612093 eV Total energy + Delta-G solvation = -1802.816627 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 165.060 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.53071 -34.15644 -33.47828 -31.41836 -27.73681 -26.67441 -22.82350 -21.76961 -17.74834 -16.84119 -15.16211 -14.64539 -13.98345 -13.94582 -12.63936 -12.34830 -12.00585 -11.37501 -11.35801 -11.07799 -10.43165 -10.17824 -9.95867 -9.45707 -9.44321 -8.27558 -7.39044 -6.74106 -4.91656 2.40393 2.54544 3.01218 3.06006 3.07894 3.81056 4.53767 5.29848 5.60103 5.67058 5.91808 6.06488 6.12208 6.32302 6.49677 6.91409 7.10457 7.34175 7.99872 8.32427 8.40231 8.98349 10.06212 10.62687 Molecular weight = 165.06amu Principal moments of inertia in cm(-1) A = 0.094391 B = 0.015691 C = 0.013553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.566067 B = 1784.037294 C = 2065.459653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.148 3.852 3 C -0.172 4.172 4 N -0.193 5.193 5 N -0.289 5.289 6 C 0.317 3.683 7 C -0.386 4.386 8 H 0.097 0.903 9 C 0.060 3.940 10 N -0.705 5.705 11 Si 0.925 3.075 12 H -0.257 1.257 13 H -0.270 1.270 14 H -0.270 1.270 15 N -0.542 5.542 16 H 0.071 0.929 17 H 0.069 0.931 18 H 0.068 0.932 19 H 0.139 0.861 20 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 -1.442 -0.009 3.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.014 4.014 3 C -0.341 4.341 4 N -0.047 5.047 5 N -0.150 5.150 6 C 0.080 3.920 7 C -0.423 4.423 8 H 0.115 0.885 9 C -0.168 4.168 10 N -0.327 5.327 11 Si 0.748 3.252 12 H -0.180 1.180 13 H -0.195 1.195 14 H -0.195 1.195 15 N -0.268 5.268 16 H 0.089 0.911 17 H 0.088 0.912 18 H 0.087 0.913 19 H 0.157 0.843 20 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.140 -1.432 -0.012 2.575 hybrid contribution -0.528 -0.512 -0.012 0.736 sum -2.669 -1.944 -0.025 3.302 Atomic orbital electron populations 1.20564 0.89876 1.02430 1.02180 1.21993 0.96917 0.90700 0.91770 1.23797 0.94720 0.98182 1.17369 1.73428 1.06791 1.22716 1.01780 1.74846 1.27099 0.93732 1.19357 1.21334 0.85536 0.94774 0.90398 1.19402 0.90450 0.91824 1.40610 0.88479 1.26196 0.98276 0.98602 0.93683 1.70076 1.09833 1.26523 1.26250 0.85976 0.79485 0.80919 0.78817 1.18034 1.19468 1.19468 1.69073 1.09871 1.28441 1.19364 0.91071 0.91169 0.91318 0.84344 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.54 10.22 36.00 0.37 -1.17 14 2 C 0.15 3.45 6.83 -82.16 -0.56 2.89 14 3 C -0.17 -4.12 11.06 -16.89 -0.19 -4.30 14 4 N -0.19 -5.37 11.64 30.78 0.36 -5.01 14 5 N -0.29 -8.70 9.09 30.85 0.28 -8.42 14 6 C 0.32 9.30 7.43 -157.91 -1.17 8.13 14 7 C -0.39 -10.67 9.39 -37.63 -0.35 -11.02 14 8 H 0.10 2.53 7.85 -52.48 -0.41 2.12 14 9 C 0.06 1.53 5.50 -17.35 -0.10 1.44 14 10 N -0.71 -18.99 11.46 55.55 0.64 -18.35 14 11 Si 0.93 18.34 29.56 -169.99 -5.02 13.31 14 12 H -0.26 -4.98 7.11 56.52 0.40 -4.58 14 13 H -0.27 -5.21 7.11 56.52 0.40 -4.81 14 14 H -0.27 -5.21 7.11 56.52 0.40 -4.81 14 15 N -0.54 -14.63 10.41 -8.74 -0.09 -14.72 14 16 H 0.07 1.06 8.14 -51.93 -0.42 0.64 14 17 H 0.07 1.13 8.14 -51.93 -0.42 0.71 14 18 H 0.07 0.95 8.10 -51.93 -0.42 0.53 14 19 H 0.14 2.72 8.06 -52.49 -0.42 2.30 14 20 H 0.28 6.71 8.29 -40.82 -0.34 6.37 14 LS Contribution 192.49 15.07 2.90 2.90 Total: -1.00 -31.69 192.49 -4.18 -35.87 By element: Atomic # 1 Polarization: -0.31 SS G_CDS: -1.23 Total: -1.54 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -2.00 Total: -4.04 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: 1.18 Total: -46.50 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 2.90 Total: 2.90 kcal Total: -31.69 -4.18 -35.87 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213573361.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.636 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds