Wall clock time and date at job start Mon Mar 30 2020 01:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39214 * 120.53021 * 2 1 4 4 N 1.32517 * 119.43508 * 180.27852 * 3 2 1 5 5 N 1.28756 * 120.52015 * 359.47527 * 4 3 2 6 6 C 1.33633 * 121.13008 * 0.53065 * 5 4 3 7 7 C 1.41548 * 119.72999 * 179.71230 * 6 5 4 8 8 H 1.08003 * 119.99861 * 180.02562 * 7 6 5 9 9 C 1.40088 * 120.00070 * 0.02562 * 7 6 5 10 10 N 1.30680 * 119.99895 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00113 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47174 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47586 * 119.99865 * 11 9 7 14 14 H 1.48502 * 109.46806 * 239.99829 * 11 9 7 15 15 N 1.32003 * 120.53309 * 180.02562 * 2 1 3 16 16 H 1.08995 * 109.47629 * 90.00143 * 1 2 3 17 17 H 1.09002 * 109.47172 * 210.00409 * 1 2 3 18 18 H 1.09000 * 109.47336 * 330.00062 * 1 2 3 19 19 H 1.08002 * 120.27966 * 359.97438 * 3 2 1 20 20 H 0.96999 * 119.99890 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2142 1.1991 0.0000 4 7 3.5391 1.1738 -0.0056 5 7 4.1717 0.0524 -0.0009 6 6 3.5148 -1.1114 -0.0008 7 6 4.2401 -2.3268 -0.0017 8 1 3.7137 -3.2699 -0.0021 9 6 5.6409 -2.3066 -0.0021 10 7 6.2779 -1.1656 -0.0021 11 14 6.5981 -3.9107 -0.0040 12 1 5.6495 -5.0533 -0.0042 13 1 7.4526 -3.9759 -1.2167 14 1 7.4533 -3.9782 1.2082 15 7 2.1776 -1.1370 -0.0005 16 1 -0.3634 0.0000 -1.0276 17 1 -0.3633 -0.8900 0.5139 18 1 -0.3634 0.8900 0.5138 19 1 1.6874 2.1420 -0.0004 20 1 7.2477 -1.1516 -0.0028 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213573361.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:21 Heat of formation + Delta-G solvation = 31.753680 kcal Electronic energy + Delta-G solvation = -8782.426694 eV Core-core repulsion = 6978.612093 eV Total energy + Delta-G solvation = -1803.814601 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 165.060 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.51256 -36.08340 -35.41237 -33.32939 -29.41768 -28.68187 -24.78982 -23.64639 -19.71526 -18.79594 -17.05787 -16.51509 -15.88185 -15.65334 -14.33382 -13.83211 -13.43797 -13.07543 -13.00895 -12.97367 -12.25214 -11.96760 -11.90780 -11.41625 -11.28179 -10.23666 -9.40302 -8.63598 -6.98407 0.49211 0.58205 1.38715 1.49611 1.58759 2.16152 2.63020 3.59186 3.60638 3.91764 4.08026 4.44931 4.76789 4.83480 4.98124 5.10605 5.22067 5.52992 5.96107 6.31808 6.44791 6.98981 8.21465 8.59887 Molecular weight = 165.06amu Principal moments of inertia in cm(-1) A = 0.094391 B = 0.015691 C = 0.013553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 296.566067 B = 1784.037294 C = 2065.459653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.146 3.854 3 C -0.164 4.164 4 N -0.229 5.229 5 N -0.339 5.339 6 C 0.285 3.715 7 C -0.417 4.417 8 H 0.101 0.899 9 C 0.016 3.984 10 N -0.747 5.747 11 Si 1.012 2.988 12 H -0.250 1.250 13 H -0.259 1.259 14 H -0.259 1.259 15 N -0.565 5.565 16 H 0.095 0.905 17 H 0.075 0.925 18 H 0.106 0.894 19 H 0.185 0.815 20 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.448 -1.964 -0.023 4.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.016 4.016 3 C -0.335 4.335 4 N -0.079 5.079 5 N -0.199 5.199 6 C 0.047 3.953 7 C -0.454 4.454 8 H 0.119 0.881 9 C -0.208 4.208 10 N -0.369 5.369 11 Si 0.829 3.171 12 H -0.173 1.173 13 H -0.183 1.183 14 H -0.183 1.183 15 N -0.290 5.290 16 H 0.114 0.886 17 H 0.094 0.906 18 H 0.124 0.876 19 H 0.202 0.798 20 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.148 -1.923 -0.026 3.689 hybrid contribution -0.404 -0.212 -0.010 0.456 sum -3.551 -2.135 -0.036 4.144 Atomic orbital electron populations 1.20740 0.84635 1.04609 1.04320 1.23126 1.00120 0.89511 0.88862 1.24593 0.93743 1.00566 1.14604 1.73277 1.09050 1.22578 1.03039 1.74793 1.28220 0.94296 1.22587 1.21807 0.86872 0.95340 0.91265 1.19836 0.92018 0.91660 1.41844 0.88061 1.27321 0.98448 1.02834 0.92199 1.70162 1.10769 1.29388 1.26614 0.84727 0.77638 0.75307 0.79387 1.17266 1.18343 1.18346 1.69162 1.09177 1.30251 1.20445 0.88628 0.90592 0.87568 0.79756 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.49 10.22 71.23 0.73 -1.76 14 2 C 0.15 6.56 6.83 42.77 0.29 6.85 14 3 C -0.16 -7.55 11.06 84.82 0.94 -6.61 14 4 N -0.23 -12.86 11.64 -56.54 -0.66 -13.52 14 5 N -0.34 -21.05 9.09 -56.32 -0.51 -21.56 14 6 C 0.28 17.14 7.43 135.00 1.00 18.14 14 7 C -0.42 -23.60 9.39 23.54 0.22 -23.38 14 8 H 0.10 5.39 7.85 -2.91 -0.02 5.37 14 9 C 0.02 0.81 5.50 85.31 0.47 1.28 14 10 N -0.75 -41.26 11.46 21.84 0.25 -41.01 14 11 Si 1.01 37.42 29.56 68.60 2.03 39.45 14 12 H -0.25 -8.82 7.11 99.48 0.71 -8.11 14 13 H -0.26 -9.06 7.11 99.48 0.71 -8.36 14 14 H -0.26 -9.07 7.11 99.48 0.71 -8.36 14 15 N -0.56 -30.51 10.41 -181.55 -1.89 -32.40 14 16 H 0.10 2.41 8.14 -2.39 -0.02 2.39 14 17 H 0.08 2.17 8.14 -2.39 -0.02 2.15 14 18 H 0.11 2.34 8.10 -2.39 -0.02 2.33 14 19 H 0.19 6.54 8.06 -2.91 -0.02 6.52 14 20 H 0.29 14.18 8.29 -92.71 -0.77 13.41 14 Total: -1.00 -71.30 192.49 4.12 -67.18 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.25 Total: 7.34 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 3.65 Total: -5.48 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -2.81 Total: -108.49 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -71.30 4.12 -67.18 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213573361.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.938 kcal (2) G-P(sol) polarization free energy of solvation -71.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds