Wall clock time and date at job start Mon Mar 30 2020 01:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35664 * 125.38971 * 2 1 4 4 C 1.39763 * 107.34638 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.77254 * 180.02562 * 4 3 2 6 6 C 1.39549 * 106.46012 * 0.02562 * 4 3 2 7 7 C 1.39743 * 126.20966 * 180.02562 * 6 4 3 8 8 H 1.08000 * 120.00299 * 359.97438 * 7 6 4 9 9 C 1.40165 * 120.00127 * 179.97438 * 7 6 4 10 10 N 1.30799 * 120.00304 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99816 * 179.72542 * 9 7 6 12 12 H 1.48498 * 109.47200 * 59.99873 * 11 9 7 13 13 H 1.48497 * 109.47052 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47156 * 299.99887 * 11 9 7 15 15 O 1.34241 * 125.38859 * 180.32562 * 2 1 3 16 16 H 1.09005 * 109.46661 * 90.00283 * 1 2 3 17 17 H 1.08997 * 109.47593 * 210.00380 * 1 2 3 18 18 H 1.09006 * 109.46941 * 330.00632 * 1 2 3 19 19 H 1.07994 * 126.33107 * 0.02562 * 3 2 1 20 20 H 1.09006 * 109.47532 * 269.96086 * 5 4 3 21 21 H 1.08999 * 109.47065 * 29.96120 * 5 4 3 22 22 H 1.09004 * 109.47309 * 149.95855 * 5 4 3 23 23 H 0.97000 * 120.00594 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.1060 0.0000 4 6 3.6216 0.6731 -0.0006 5 6 4.8532 1.5414 -0.0003 6 6 3.5830 -0.7219 -0.0015 7 6 4.6873 -1.5782 -0.0019 8 1 5.6872 -1.1701 -0.0018 9 6 4.4973 -2.9669 -0.0023 10 7 3.2863 -3.4614 -0.0019 11 14 5.9735 -4.1116 -0.0105 12 1 6.7995 -3.8629 1.1982 13 1 5.5068 -5.5213 -0.0090 14 1 6.7878 -3.8606 -1.2267 15 8 2.2844 -1.0944 -0.0062 16 1 -0.3633 -0.0001 -1.0277 17 1 -0.3634 -0.8899 0.5139 18 1 -0.3633 0.8901 0.5138 19 1 1.9539 2.1314 0.0004 20 1 5.1504 1.7510 -1.0279 21 1 4.6373 2.4781 0.5136 22 1 5.6630 1.0233 0.5137 23 1 3.1548 -4.4224 -0.0026 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213577535.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:08 Heat of formation + Delta-G solvation = -18.845526 kcal Electronic energy + Delta-G solvation = -9177.844706 eV Core-core repulsion = 7377.657640 eV Total energy + Delta-G solvation = -1800.187066 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.073 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.22497 -33.67256 -32.17807 -30.78583 -27.48589 -26.47542 -22.91651 -19.50895 -18.51370 -17.00320 -15.13990 -14.22743 -14.18130 -12.97337 -12.59989 -12.13743 -12.08069 -11.70374 -11.53149 -11.25376 -10.99625 -10.79447 -10.50330 -10.33190 -9.60085 -9.40487 -7.86489 -6.98658 -6.79132 -4.29277 2.94527 3.05252 3.08514 3.60216 3.90401 4.10280 4.98612 5.26024 6.13609 6.36712 6.38911 6.47210 6.60875 6.68854 6.82994 6.87133 7.07324 7.34643 7.45673 7.86009 8.08449 8.32161 8.67308 8.81922 9.37526 10.20599 Molecular weight = 166.07amu Principal moments of inertia in cm(-1) A = 0.058252 B = 0.018017 C = 0.013901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.552733 B = 1553.678329 C = 2013.781772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.162 4.162 3 C -0.162 4.162 4 C -0.375 4.375 5 C -0.036 4.036 6 C 0.211 3.789 7 C -0.444 4.444 8 H 0.102 0.898 9 C 0.067 3.933 10 N -0.780 5.780 11 Si 0.921 3.079 12 H -0.263 1.263 13 H -0.277 1.277 14 H -0.263 1.263 15 O -0.155 6.155 16 H 0.050 0.950 17 H 0.055 0.945 18 H 0.060 0.940 19 H 0.108 0.892 20 H 0.029 0.971 21 H 0.032 0.968 22 H 0.043 0.957 23 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 1.172 0.074 1.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.211 4.211 3 C -0.181 4.181 4 C -0.377 4.377 5 C -0.093 4.093 6 C 0.158 3.842 7 C -0.474 4.474 8 H 0.120 0.880 9 C -0.153 4.153 10 N -0.407 5.407 11 Si 0.745 3.255 12 H -0.187 1.187 13 H -0.202 1.202 14 H -0.187 1.187 15 O -0.052 6.052 16 H 0.068 0.932 17 H 0.074 0.926 18 H 0.079 0.921 19 H 0.126 0.874 20 H 0.048 0.952 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.009 0.697 0.070 0.701 hybrid contribution 0.581 -0.352 -0.020 0.680 sum 0.590 0.345 0.051 0.685 Atomic orbital electron populations 1.19757 0.88506 1.01154 1.00538 1.21639 0.92677 0.85658 1.21077 1.20636 0.93441 0.96364 1.07702 1.19944 0.93760 0.93000 1.31014 1.19536 0.94945 0.96349 0.98480 1.19400 0.81465 0.90994 0.92375 1.18666 0.92259 0.89727 1.46710 0.88045 1.26121 0.97358 0.99380 0.92466 1.69776 1.22273 1.14813 1.33815 0.86146 0.80990 0.78298 0.80037 1.18737 1.20201 1.18728 1.84373 1.16077 1.31418 1.73371 0.93167 0.92631 0.92116 0.87406 0.95190 0.94887 0.93808 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.86 10.41 36.01 0.37 -0.48 14 2 C -0.16 -4.21 7.31 -35.23 -0.26 -4.47 14 3 C -0.16 -4.12 10.70 -39.93 -0.43 -4.55 14 4 C -0.37 -10.08 6.28 -103.56 -0.65 -10.73 14 5 C -0.04 -0.81 10.17 36.01 0.37 -0.45 14 6 C 0.21 6.16 6.79 -38.53 -0.26 5.90 14 7 C -0.44 -12.35 9.07 -38.30 -0.35 -12.70 14 8 H 0.10 2.63 7.30 -52.49 -0.38 2.25 14 9 C 0.07 1.75 5.50 -17.27 -0.09 1.65 14 10 N -0.78 -21.47 12.01 55.56 0.67 -20.80 14 11 Si 0.92 19.01 29.56 -169.99 -5.03 13.99 14 12 H -0.26 -5.30 7.11 56.52 0.40 -4.90 14 13 H -0.28 -5.54 7.11 56.52 0.40 -5.14 14 14 H -0.26 -5.30 7.11 56.52 0.40 -4.90 14 15 O -0.16 -4.61 8.97 3.64 0.03 -4.58 14 16 H 0.05 0.92 8.14 -51.93 -0.42 0.50 14 17 H 0.05 1.07 8.14 -51.93 -0.42 0.65 14 18 H 0.06 1.04 8.14 -51.93 -0.42 0.62 14 19 H 0.11 2.40 8.06 -52.49 -0.42 1.98 14 20 H 0.03 0.63 8.14 -51.93 -0.42 0.21 14 21 H 0.03 0.66 8.14 -51.93 -0.42 0.24 14 22 H 0.04 0.95 7.57 -51.93 -0.39 0.56 14 23 H 0.28 7.01 8.30 -40.82 -0.34 6.67 14 LS Contribution 210.04 15.07 3.17 3.17 Total: -1.00 -30.42 210.04 -4.91 -35.33 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -2.45 Total: -1.28 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: -1.30 Total: -25.82 kcal Atomic # 7 Polarization: -21.47 SS G_CDS: 0.67 Total: -20.80 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: 0.03 Total: -4.58 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 3.17 Total: 3.17 kcal Total: -30.42 -4.91 -35.33 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213577535.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.484 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds