Wall clock time and date at job start Mon Mar 30 2020 01:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47090 * 2 1 4 4 C 1.35663 * 126.32883 * 270.00055 * 3 2 1 5 5 O 1.34239 * 109.22068 * 179.73474 * 4 3 2 6 6 C 1.35086 * 109.38677 * 0.44017 * 5 4 3 7 7 C 1.39745 * 126.20866 * 179.82602 * 6 5 4 8 8 H 1.08001 * 120.00640 * 185.89924 * 7 6 5 9 9 C 1.40164 * 119.99544 * 5.89864 * 7 6 5 10 10 N 1.30810 * 119.99553 * 183.67245 * 9 7 6 11 11 Si 1.86795 * 120.00110 * 3.66984 * 9 7 6 12 12 H 1.48500 * 109.46993 * 180.02562 * 11 9 7 13 13 H 1.48500 * 109.47500 * 299.99915 * 11 9 7 14 14 H 1.48494 * 109.47097 * 60.00264 * 11 9 7 15 15 C 1.39555 * 107.58746 * 359.57092 * 6 5 4 16 16 H 1.09001 * 109.47084 * 180.02562 * 1 2 3 17 17 H 1.09008 * 109.46690 * 299.99926 * 1 2 3 18 18 H 1.08999 * 109.47062 * 59.99892 * 1 2 3 19 19 H 1.08997 * 109.47133 * 240.00196 * 2 1 3 20 20 H 1.09001 * 109.47759 * 119.99842 * 2 1 3 21 21 H 1.08004 * 125.38924 * 0.02562 * 4 3 2 22 22 H 0.96995 * 119.99972 * 354.80655 * 10 9 7 23 23 H 1.07998 * 126.76781 * 180.26787 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3002 2.1785 -1.0929 5 8 2.7223 3.3901 -0.6981 6 6 2.7458 3.4388 0.6517 7 6 3.1324 4.5320 1.4317 8 1 3.2041 4.4315 2.5047 9 6 3.4270 5.7590 0.8215 10 7 3.8579 6.7614 1.5431 11 14 3.2045 5.9626 -1.0219 12 1 3.5822 7.3434 -1.4165 13 1 4.0705 4.9900 -1.7356 14 1 1.7844 5.7161 -1.3792 15 6 2.3084 2.2014 1.1260 16 1 -0.3633 -1.0277 0.0005 17 1 -0.3633 0.5139 0.8901 18 1 -0.3633 0.5138 -0.8900 19 1 1.8933 -0.5138 -0.8900 20 1 1.8935 -0.5138 0.8900 21 1 2.1869 1.8593 -2.1185 22 1 3.9020 6.6803 2.5086 23 1 2.2037 1.9054 2.1594 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213577775.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:33 Heat of formation + Delta-G solvation = -43.472096 kcal Electronic energy + Delta-G solvation = -9114.272710 eV Core-core repulsion = 7313.017756 eV Total energy + Delta-G solvation = -1801.254954 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.073 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.65135 -35.94113 -35.51943 -32.00592 -30.58744 -26.42187 -24.45911 -21.69755 -21.48567 -19.37857 -17.79031 -16.47376 -15.81281 -15.65530 -15.13246 -14.57535 -14.17143 -13.42967 -13.17799 -12.90737 -12.84835 -12.07776 -11.95266 -11.65634 -11.49637 -11.32829 -10.11442 -9.53576 -9.32924 -6.63802 1.04043 1.36292 1.64066 1.68308 2.04557 2.17481 2.93970 3.04019 4.19385 4.26472 4.57015 4.63201 4.88074 4.91346 5.05699 5.20479 5.29449 5.37352 5.42543 5.56536 5.86541 6.10717 6.40088 6.46254 6.91652 7.87515 Molecular weight = 166.07amu Principal moments of inertia in cm(-1) A = 0.085035 B = 0.015766 C = 0.014003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.196438 B = 1775.555271 C = 1999.035410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C -0.128 4.128 4 C -0.181 4.181 5 O -0.220 6.220 6 C 0.153 3.847 7 C -0.526 4.526 8 H 0.075 0.925 9 C 0.011 3.989 10 N -0.830 5.830 11 Si 1.112 2.888 12 H -0.267 1.267 13 H -0.261 1.261 14 H -0.269 1.269 15 C -0.401 4.401 16 H 0.079 0.921 17 H 0.037 0.963 18 H 0.053 0.947 19 H 0.084 0.916 20 H 0.063 0.937 21 H 0.211 0.789 22 H 0.282 0.718 23 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 -7.544 -5.777 10.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 C -0.130 4.130 4 C -0.244 4.244 5 O -0.122 6.122 6 C 0.102 3.898 7 C -0.556 4.556 8 H 0.093 0.907 9 C -0.204 4.204 10 N -0.455 5.455 11 Si 0.934 3.066 12 H -0.193 1.193 13 H -0.186 1.186 14 H -0.195 1.195 15 C -0.421 4.421 16 H 0.098 0.902 17 H 0.056 0.944 18 H 0.072 0.928 19 H 0.102 0.898 20 H 0.082 0.918 21 H 0.228 0.772 22 H 0.092 0.908 23 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.576 -6.234 -7.099 10.101 hybrid contribution -0.072 -0.967 2.244 2.445 sum -3.648 -7.200 -4.854 9.419 Atomic orbital electron populations 1.21674 0.94237 1.02182 1.01352 1.19964 0.96368 0.89852 1.02519 1.20289 1.02536 0.97918 0.92214 1.23869 1.16550 0.84157 0.99832 1.83828 1.71120 1.34828 1.22422 1.19952 0.94610 0.95691 0.79584 1.19748 1.45802 0.95133 0.94926 0.90693 1.28393 0.89024 0.90910 1.12064 1.70614 1.31849 1.33498 1.09529 0.82911 0.79228 0.76511 0.67992 1.19290 1.18631 1.19498 1.21362 1.26120 0.96569 0.98090 0.90175 0.94409 0.92791 0.89763 0.91791 0.77200 0.90756 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.89 71.98 0.71 -3.08 14 2 C -0.05 -1.59 6.44 29.85 0.19 -1.39 14 3 C -0.13 -5.58 5.38 -20.09 -0.11 -5.69 14 4 C -0.18 -7.92 11.99 67.22 0.81 -7.11 14 5 O -0.22 -11.37 6.08 -9.74 -0.06 -11.43 14 6 C 0.15 8.53 6.51 22.95 0.15 8.68 14 7 C -0.53 -30.79 9.76 23.10 0.23 -30.57 14 8 H 0.07 4.53 8.06 -2.91 -0.02 4.51 14 9 C 0.01 0.62 5.52 85.31 0.47 1.09 14 10 N -0.83 -46.44 13.65 21.87 0.30 -46.14 14 11 Si 1.11 51.41 25.94 68.60 1.78 53.19 14 12 H -0.27 -11.39 7.11 99.48 0.71 -10.69 14 13 H -0.26 -11.79 6.80 99.48 0.68 -11.11 14 14 H -0.27 -12.21 7.11 99.48 0.71 -11.50 14 15 C -0.40 -20.73 10.89 22.96 0.25 -20.48 14 16 H 0.08 1.68 8.14 -2.39 -0.02 1.66 14 17 H 0.04 1.15 8.14 -2.38 -0.02 1.13 14 18 H 0.05 1.46 8.14 -2.39 -0.02 1.44 14 19 H 0.08 2.25 8.14 -2.39 -0.02 2.23 14 20 H 0.06 1.99 8.14 -2.39 -0.02 1.97 14 21 H 0.21 7.07 8.06 -2.91 -0.02 7.05 14 22 H 0.28 15.42 8.72 -92.71 -0.81 14.61 14 23 H 0.11 5.58 8.06 -2.91 -0.02 5.56 14 Total: -1.00 -61.90 206.69 5.83 -56.07 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.11 Total: 6.86 kcal Atomic # 6 Polarization: -61.25 SS G_CDS: 2.70 Total: -58.55 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.30 Total: -46.14 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.06 Total: -11.43 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 1.78 Total: 53.19 kcal Total: -61.90 5.83 -56.07 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213577775.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.599 kcal (2) G-P(sol) polarization free energy of solvation -61.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds