Wall clock time and date at job start Mon Mar 30 2020 01:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36220 * 125.69401 * 2 1 4 4 N 1.36414 * 107.19745 * 180.02562 * 3 2 1 5 5 C 1.46500 * 126.55562 * 179.97438 * 4 3 2 6 6 C 1.37540 * 106.88800 * 0.22903 * 4 3 2 7 7 C 1.39997 * 125.96251 * 179.77491 * 6 4 3 8 8 H 1.07994 * 120.00160 * 354.31307 * 7 6 4 9 9 C 1.40236 * 119.99967 * 174.30910 * 7 6 4 10 10 N 1.30690 * 120.00005 * 6.07043 * 9 7 6 11 11 Si 1.86798 * 119.99972 * 186.06701 * 9 7 6 12 12 H 1.48495 * 109.46986 * 94.98613 * 11 9 7 13 13 H 1.48506 * 109.47042 * 214.98108 * 11 9 7 14 14 H 1.48499 * 109.47431 * 334.98391 * 11 9 7 15 15 N 1.32759 * 125.69124 * 180.02562 * 2 1 3 16 16 H 1.08997 * 109.47146 * 90.00157 * 1 2 3 17 17 H 1.09007 * 109.46995 * 210.00161 * 1 2 3 18 18 H 1.08998 * 109.47250 * 329.99343 * 1 2 3 19 19 H 1.08008 * 126.39610 * 0.06200 * 3 2 1 20 20 H 1.09002 * 109.46841 * 90.02384 * 5 4 3 21 21 H 1.09004 * 109.47290 * 330.02733 * 5 4 3 22 22 H 1.08992 * 109.47312 * 210.02992 * 5 4 3 23 23 H 0.96996 * 120.00403 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3017 1.1063 0.0000 4 7 3.5954 0.6735 -0.0006 5 6 4.7962 1.5127 -0.0013 6 6 3.5568 -0.7013 -0.0062 7 6 4.6664 -1.5549 -0.0131 8 1 5.6616 -1.1462 -0.1071 9 6 4.4856 -2.9408 0.1021 10 7 3.2800 -3.4452 0.0965 11 14 5.9681 -4.0658 0.2635 12 1 6.2291 -4.3375 1.6999 13 1 5.6978 -5.3449 -0.4410 14 1 7.1556 -3.4096 -0.3399 15 7 2.2815 -1.0782 -0.0005 16 1 -0.3633 0.0000 -1.0276 17 1 -0.3633 -0.8900 0.5139 18 1 -0.3634 0.8899 0.5139 19 1 1.9696 2.1340 0.0009 20 1 5.0948 1.7206 1.0262 21 1 4.5838 2.4505 -0.5148 22 1 5.6034 0.9916 -0.5159 23 1 3.1549 -4.4038 0.1758 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213577948.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:02 Heat of formation + Delta-G solvation = 49.065000 kcal Electronic energy + Delta-G solvation = -9187.670482 eV Core-core repulsion = 7422.720988 eV Total energy + Delta-G solvation = -1764.949494 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.77712 -33.31446 -32.73058 -29.57431 -27.39327 -25.76528 -23.48031 -19.55150 -18.54470 -16.63099 -15.18509 -14.49099 -14.12887 -13.05869 -12.75925 -12.46295 -12.00108 -11.44234 -11.33229 -11.07849 -11.06539 -10.94098 -10.35604 -10.02200 -9.12159 -7.75373 -7.69550 -6.89084 -6.33959 -4.20495 3.08356 3.18882 3.21793 3.70553 4.06998 4.54072 4.72441 5.63085 5.72885 6.09025 6.16367 6.19951 6.43459 6.46427 6.64956 6.81737 7.25687 7.42663 7.70937 8.15538 8.32656 8.66357 9.03648 9.40825 10.32723 10.60035 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.059124 B = 0.018130 C = 0.014028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.465531 B = 1543.990331 C = 1995.563471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.005 3.995 3 C -0.176 4.176 4 N -0.514 5.514 5 C 0.101 3.899 6 C 0.374 3.626 7 C -0.466 4.466 8 H 0.077 0.923 9 C 0.083 3.917 10 N -0.744 5.744 11 Si 0.910 3.090 12 H -0.272 1.272 13 H -0.278 1.278 14 H -0.265 1.265 15 N -0.513 5.513 16 H 0.049 0.951 17 H 0.057 0.943 18 H 0.047 0.953 19 H 0.133 0.867 20 H 0.048 0.952 21 H 0.056 0.944 22 H 0.071 0.929 23 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.902 4.021 0.100 4.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.129 4.129 3 C -0.306 4.306 4 N -0.204 5.204 5 C -0.044 4.044 6 C 0.131 3.869 7 C -0.505 4.505 8 H 0.095 0.905 9 C -0.141 4.141 10 N -0.369 5.369 11 Si 0.735 3.265 12 H -0.198 1.198 13 H -0.203 1.203 14 H -0.189 1.189 15 N -0.235 5.235 16 H 0.068 0.932 17 H 0.076 0.924 18 H 0.066 0.934 19 H 0.151 0.849 20 H 0.066 0.934 21 H 0.075 0.925 22 H 0.090 0.910 23 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.543 3.158 0.109 3.516 hybrid contribution 1.022 0.519 0.091 1.150 sum 2.565 3.677 0.200 4.488 Atomic orbital electron populations 1.19818 0.90716 1.00482 1.00169 1.20685 0.95111 0.90547 1.06563 1.21580 0.84360 0.97752 1.26917 1.45312 1.04537 1.07411 1.63140 1.21412 0.87938 0.94188 1.00821 1.20264 0.93283 0.77743 0.95582 1.18091 0.91210 0.90333 1.50890 0.90489 1.25687 0.96492 0.98286 0.93622 1.70028 1.21617 1.12809 1.32399 0.86299 0.81814 0.79545 0.78865 1.19772 1.20314 1.18930 1.71175 0.98913 1.25305 1.28111 0.93236 0.92422 0.93422 0.84907 0.93357 0.92496 0.91001 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.13 10.42 36.00 0.38 -0.75 14 2 C 0.00 0.12 7.07 -82.92 -0.59 -0.46 14 3 C -0.18 -4.34 11.51 -16.24 -0.19 -4.53 14 4 N -0.51 -13.01 3.21 -123.36 -0.40 -13.40 14 5 C 0.10 1.94 10.98 59.85 0.66 2.60 14 6 C 0.37 10.95 7.43 -155.60 -1.16 9.79 14 7 C -0.47 -13.12 9.01 -38.17 -0.34 -13.46 14 8 H 0.08 1.99 7.12 -52.49 -0.37 1.62 14 9 C 0.08 2.24 5.49 -17.29 -0.09 2.14 14 10 N -0.74 -21.42 11.92 55.56 0.66 -20.75 14 11 Si 0.91 19.61 29.57 -169.99 -5.03 14.58 14 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 14 13 H -0.28 -5.86 7.11 56.52 0.40 -5.46 14 14 H -0.27 -5.53 7.11 56.52 0.40 -5.13 14 15 N -0.51 -15.57 9.43 -8.95 -0.08 -15.66 14 16 H 0.05 0.96 8.14 -51.93 -0.42 0.54 14 17 H 0.06 1.21 8.14 -51.93 -0.42 0.79 14 18 H 0.05 0.85 8.14 -51.93 -0.42 0.42 14 19 H 0.13 2.78 8.06 -52.48 -0.42 2.36 14 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 14 21 H 0.06 0.93 8.14 -51.93 -0.42 0.50 14 22 H 0.07 1.33 7.32 -51.93 -0.38 0.95 14 23 H 0.27 7.07 8.29 -40.82 -0.34 6.73 14 LS Contribution 208.85 15.07 3.15 3.15 Total: -1.00 -32.93 208.85 -5.46 -38.38 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -2.42 Total: -1.63 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.34 Total: -4.67 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.18 Total: -49.81 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -32.93 -5.46 -38.38 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213577948.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.447 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds