Wall clock time and date at job start Mon Mar 30 2020 01:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36220 * 125.69401 * 2 1 4 4 N 1.36414 * 107.19745 * 180.02562 * 3 2 1 5 5 C 1.46500 * 126.55562 * 179.97438 * 4 3 2 6 6 C 1.37540 * 106.88800 * 0.22903 * 4 3 2 7 7 C 1.39997 * 125.96251 * 179.77491 * 6 4 3 8 8 H 1.07994 * 120.00160 * 354.31307 * 7 6 4 9 9 C 1.40236 * 119.99967 * 174.30910 * 7 6 4 10 10 N 1.30690 * 120.00005 * 6.07043 * 9 7 6 11 11 Si 1.86798 * 119.99972 * 186.06701 * 9 7 6 12 12 H 1.48495 * 109.46986 * 94.98613 * 11 9 7 13 13 H 1.48506 * 109.47042 * 214.98108 * 11 9 7 14 14 H 1.48499 * 109.47431 * 334.98391 * 11 9 7 15 15 N 1.32759 * 125.69124 * 180.02562 * 2 1 3 16 16 H 1.08997 * 109.47146 * 90.00157 * 1 2 3 17 17 H 1.09007 * 109.46995 * 210.00161 * 1 2 3 18 18 H 1.08998 * 109.47250 * 329.99343 * 1 2 3 19 19 H 1.08008 * 126.39610 * 0.06200 * 3 2 1 20 20 H 1.09002 * 109.46841 * 90.02384 * 5 4 3 21 21 H 1.09004 * 109.47290 * 330.02733 * 5 4 3 22 22 H 1.08992 * 109.47312 * 210.02992 * 5 4 3 23 23 H 0.96996 * 120.00403 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3017 1.1063 0.0000 4 7 3.5954 0.6735 -0.0006 5 6 4.7962 1.5127 -0.0013 6 6 3.5568 -0.7013 -0.0062 7 6 4.6664 -1.5549 -0.0131 8 1 5.6616 -1.1462 -0.1071 9 6 4.4856 -2.9408 0.1021 10 7 3.2800 -3.4452 0.0965 11 14 5.9681 -4.0658 0.2635 12 1 6.2291 -4.3375 1.6999 13 1 5.6978 -5.3449 -0.4410 14 1 7.1556 -3.4096 -0.3399 15 7 2.2815 -1.0782 -0.0005 16 1 -0.3633 0.0000 -1.0276 17 1 -0.3633 -0.8900 0.5139 18 1 -0.3634 0.8899 0.5139 19 1 1.9696 2.1340 0.0009 20 1 5.0948 1.7206 1.0262 21 1 4.5838 2.4505 -0.5148 22 1 5.6034 0.9916 -0.5159 23 1 3.1549 -4.4038 0.1758 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213577948.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:02 Heat of formation + Delta-G solvation = 27.400652 kcal Electronic energy + Delta-G solvation = -9188.609918 eV Core-core repulsion = 7422.720988 eV Total energy + Delta-G solvation = -1765.888930 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.74208 -35.31955 -34.56814 -31.48121 -29.25290 -27.61789 -25.34699 -21.54100 -20.48005 -18.61701 -17.12272 -16.28190 -15.93998 -14.82575 -14.65291 -14.08390 -13.72129 -13.16629 -13.07618 -12.85298 -12.80640 -12.62475 -12.23747 -11.83360 -11.07067 -9.75018 -9.74058 -8.89830 -8.32801 -6.27726 1.36615 1.43502 1.59074 1.81445 2.27425 2.71706 2.76488 3.59697 4.24271 4.40957 4.58452 4.65483 4.73477 4.79837 5.01654 5.13216 5.26094 5.51206 5.75768 6.17716 6.32639 6.73188 7.02557 7.41404 8.31960 8.64340 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.059124 B = 0.018130 C = 0.014028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.465531 B = 1543.990331 C = 1995.563471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.040 4.040 3 C -0.163 4.163 4 N -0.519 5.519 5 C 0.093 3.907 6 C 0.334 3.666 7 C -0.496 4.496 8 H 0.090 0.910 9 C 0.030 3.970 10 N -0.794 5.794 11 Si 0.996 3.004 12 H -0.266 1.266 13 H -0.272 1.272 14 H -0.252 1.252 15 N -0.562 5.562 16 H 0.061 0.939 17 H 0.045 0.955 18 H 0.081 0.919 19 H 0.175 0.825 20 H 0.065 0.935 21 H 0.091 0.909 22 H 0.074 0.926 23 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.897 5.039 0.164 5.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.172 4.172 3 C -0.293 4.293 4 N -0.208 5.208 5 C -0.049 4.049 6 C 0.089 3.911 7 C -0.535 4.535 8 H 0.108 0.892 9 C -0.189 4.189 10 N -0.420 5.420 11 Si 0.816 3.184 12 H -0.191 1.191 13 H -0.197 1.197 14 H -0.175 1.175 15 N -0.285 5.285 16 H 0.080 0.920 17 H 0.064 0.936 18 H 0.100 0.900 19 H 0.192 0.808 20 H 0.083 0.917 21 H 0.110 0.890 22 H 0.092 0.908 23 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.544 4.224 0.170 4.934 hybrid contribution 0.659 0.356 0.065 0.752 sum 3.203 4.581 0.234 5.594 Atomic orbital electron populations 1.19859 0.87700 1.01575 1.01270 1.21561 0.97505 0.90391 1.07762 1.22268 0.83992 0.99177 1.23852 1.45650 1.06436 1.06949 1.61772 1.21747 0.86017 0.94690 1.02493 1.20658 0.93544 0.79730 0.97214 1.18557 0.91671 0.91357 1.51947 0.89238 1.26805 0.99938 0.99690 0.92423 1.70174 1.24509 1.13437 1.33908 0.85005 0.77437 0.76882 0.79028 1.19111 1.19673 1.17504 1.71068 1.00290 1.27910 1.29207 0.92050 0.93616 0.89991 0.80829 0.91680 0.89022 0.90769 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.89 10.42 71.23 0.74 -1.15 14 2 C -0.04 -2.09 7.07 41.95 0.30 -1.79 14 3 C -0.16 -7.69 11.51 83.51 0.96 -6.72 14 4 N -0.52 -25.64 3.21 -544.21 -1.75 -27.39 14 5 C 0.09 3.35 10.98 127.77 1.40 4.75 14 6 C 0.33 19.74 7.43 133.59 0.99 20.73 14 7 C -0.50 -28.22 9.01 23.18 0.21 -28.01 14 8 H 0.09 4.62 7.12 -2.91 -0.02 4.60 14 9 C 0.03 1.65 5.49 85.35 0.47 2.11 14 10 N -0.79 -47.02 11.92 21.88 0.26 -46.76 14 11 Si 1.00 40.34 29.57 68.60 2.03 42.37 14 12 H -0.27 -10.41 7.11 99.48 0.71 -9.70 14 13 H -0.27 -10.61 7.11 99.48 0.71 -9.90 14 14 H -0.25 -9.51 7.11 99.48 0.71 -8.80 14 15 N -0.56 -34.82 9.43 -182.22 -1.72 -36.53 14 16 H 0.06 2.31 8.14 -2.39 -0.02 2.29 14 17 H 0.04 1.93 8.14 -2.38 -0.02 1.91 14 18 H 0.08 2.71 8.14 -2.39 -0.02 2.69 14 19 H 0.17 6.57 8.06 -2.91 -0.02 6.55 14 20 H 0.06 2.12 8.14 -2.39 -0.02 2.10 14 21 H 0.09 2.64 8.14 -2.38 -0.02 2.62 14 22 H 0.07 2.61 7.32 -2.39 -0.02 2.60 14 23 H 0.28 14.78 8.29 -92.71 -0.77 14.02 14 Total: -1.00 -72.52 208.85 5.09 -67.43 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.19 Total: 10.96 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 5.07 Total: -10.08 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -3.20 Total: -110.68 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -72.52 5.09 -67.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213577948.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.827 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds