Wall clock time and date at job start Mon Mar 30 2020 02:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47165 * 2 1 4 4 C 1.35027 * 126.42972 * 90.31443 * 3 2 1 5 5 C 1.47421 * 103.28451 * 180.12235 * 4 3 2 6 6 C 1.41732 * 127.46896 * 179.85175 * 5 4 3 7 7 H 1.08002 * 120.00028 * 354.09152 * 6 5 4 8 8 C 1.39979 * 120.00264 * 174.09471 * 6 5 4 9 9 N 1.30753 * 120.00150 * 5.98437 * 8 6 5 10 10 Si 1.86806 * 120.00377 * 185.98549 * 8 6 5 11 11 H 1.48493 * 109.46961 * 94.97856 * 10 8 6 12 12 H 1.48502 * 109.47071 * 214.98020 * 10 8 6 13 13 H 1.48502 * 109.46954 * 334.98157 * 10 8 6 14 14 N 1.32213 * 105.05991 * 359.59425 * 5 4 3 15 15 O 1.20761 * 111.32981 * 0.25573 * 14 5 4 16 16 H 1.08992 * 109.47144 * 60.00616 * 1 2 3 17 17 H 1.09002 * 109.46970 * 180.02562 * 1 2 3 18 18 H 1.09003 * 109.47057 * 299.99675 * 1 2 3 19 19 H 1.09003 * 109.47501 * 239.99693 * 2 1 3 20 20 H 1.09006 * 109.47329 * 119.99540 * 2 1 3 21 21 H 1.08006 * 128.35530 * 359.97438 * 4 3 2 22 22 H 0.96991 * 120.00652 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3052 2.1748 1.0864 5 6 2.7512 3.4549 0.5070 6 6 3.1625 4.6193 1.2024 7 1 3.0807 4.6628 2.2785 8 6 3.6747 5.7130 0.4947 9 7 3.6656 5.7080 -0.8128 10 14 4.3714 7.1798 1.4182 11 1 5.8426 7.0280 1.5507 12 1 4.0677 8.4258 0.6694 13 1 3.7576 7.2516 2.7685 14 7 2.6897 3.2794 -0.8020 15 8 2.2980 2.1711 -1.0787 16 1 -0.3633 0.5137 -0.8900 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 1.8934 -0.5139 -0.8900 20 1 1.8934 -0.5138 0.8901 21 1 2.2158 1.9058 2.1286 22 1 4.0208 6.4657 -1.3032 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213579859.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:43 Heat of formation + Delta-G solvation = 34.141565 kcal Electronic energy + Delta-G solvation = -9147.848090 eV Core-core repulsion = 7284.532806 eV Total energy + Delta-G solvation = -1863.315284 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.069 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.37325 -33.86011 -33.77622 -31.05142 -28.53738 -26.07179 -23.13792 -21.19259 -19.65764 -16.47511 -15.59164 -15.43049 -14.60424 -13.93840 -13.50969 -12.75062 -12.12200 -11.85544 -11.40095 -11.23164 -10.94662 -10.69629 -10.51034 -9.98064 -9.54004 -8.84858 -8.18283 -7.69933 -6.47235 -4.40053 3.07937 3.16909 3.17155 3.21317 4.07794 4.14936 4.69820 5.41939 5.44809 5.69807 5.72329 6.10992 6.16100 6.33934 6.52650 6.71564 6.72965 7.18825 7.45642 7.47630 8.41982 8.72872 9.01909 10.49651 10.71141 Molecular weight = 167.07amu Principal moments of inertia in cm(-1) A = 0.120587 B = 0.012572 C = 0.011790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 232.141866 B = 2226.608386 C = 2374.232586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.032 4.032 3 C -0.075 4.075 4 C -0.288 4.288 5 C 0.162 3.838 6 C -0.449 4.449 7 H 0.083 0.917 8 C 0.070 3.930 9 N -0.776 5.776 10 Si 0.913 3.087 11 H -0.272 1.272 12 H -0.278 1.278 13 H -0.263 1.263 14 N -0.408 5.408 15 O 0.033 5.967 16 H 0.057 0.943 17 H 0.055 0.945 18 H 0.056 0.944 19 H 0.071 0.929 20 H 0.077 0.923 21 H 0.137 0.863 22 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.576 -5.701 2.671 6.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 C -0.138 4.138 4 C -0.310 4.310 5 C 0.015 3.985 6 C -0.488 4.488 7 H 0.101 0.899 8 C -0.150 4.150 9 N -0.405 5.405 10 Si 0.738 3.262 11 H -0.197 1.197 12 H -0.204 1.204 13 H -0.187 1.187 14 N -0.135 5.135 15 O -0.016 6.016 16 H 0.076 0.924 17 H 0.074 0.926 18 H 0.075 0.925 19 H 0.090 0.910 20 H 0.095 0.905 21 H 0.155 0.845 22 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.313 -4.963 1.380 5.647 hybrid contribution 0.287 0.488 1.327 1.443 sum -2.025 -4.475 2.708 5.609 Atomic orbital electron populations 1.21745 0.94998 1.01018 1.02551 1.19800 0.95551 0.89164 1.02571 1.23776 1.05059 0.95880 0.89110 1.23255 1.13776 0.95840 0.98140 1.21654 0.95689 0.93185 0.87994 1.18635 1.39598 0.96385 0.94149 0.89886 1.25844 0.94836 0.99476 0.94838 1.69884 1.33930 1.29737 1.06914 0.86225 0.79592 0.80177 0.80180 1.19721 1.20373 1.18743 1.74809 1.27475 0.95281 1.15933 1.84605 1.64551 1.19626 1.32802 0.92403 0.92647 0.92533 0.90986 0.90457 0.84503 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.89 37.16 0.37 -1.70 14 2 C -0.03 -0.52 6.49 -27.89 -0.18 -0.71 14 3 C -0.07 -1.71 6.70 -35.45 -0.24 -1.94 14 4 C -0.29 -7.12 11.31 -36.99 -0.42 -7.54 14 5 C 0.16 4.78 7.00 -82.63 -0.58 4.20 14 6 C -0.45 -13.04 9.48 -37.60 -0.36 -13.40 14 7 H 0.08 2.24 7.85 -52.49 -0.41 1.82 14 8 C 0.07 1.94 5.49 -17.36 -0.10 1.84 14 9 N -0.78 -22.89 12.07 55.55 0.67 -22.22 14 10 Si 0.91 20.20 29.56 -169.99 -5.03 15.18 14 11 H -0.27 -5.90 7.11 56.52 0.40 -5.50 14 12 H -0.28 -6.01 7.11 56.52 0.40 -5.61 14 13 H -0.26 -5.64 7.11 56.52 0.40 -5.24 14 14 N -0.41 -12.40 10.51 33.33 0.35 -12.05 14 15 O 0.03 0.88 11.09 17.16 0.19 1.07 14 16 H 0.06 0.86 8.14 -51.93 -0.42 0.44 14 17 H 0.05 0.61 8.14 -51.93 -0.42 0.19 14 18 H 0.06 0.82 8.14 -51.93 -0.42 0.40 14 19 H 0.07 1.06 8.14 -51.93 -0.42 0.64 14 20 H 0.08 1.10 8.14 -51.93 -0.42 0.68 14 21 H 0.14 2.97 8.06 -52.48 -0.42 2.55 14 22 H 0.27 7.34 8.29 -40.82 -0.34 7.00 14 LS Contribution 205.82 15.07 3.10 3.10 Total: -1.00 -32.50 205.82 -4.29 -36.80 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: -2.08 Total: -2.63 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -1.50 Total: -19.24 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: 1.02 Total: -34.28 kcal Atomic # 8 Polarization: 0.88 SS G_CDS: 0.19 Total: 1.07 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 3.10 Total: 3.10 kcal Total: -32.50 -4.29 -36.80 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213579859.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.939 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds