Wall clock time and date at job start Mon Mar 30 2020 02:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 109.47165 * 2 1 4 4 C 1.35027 * 126.42972 * 90.31443 * 3 2 1 5 5 C 1.47421 * 103.28451 * 180.12235 * 4 3 2 6 6 C 1.41732 * 127.46896 * 179.85175 * 5 4 3 7 7 H 1.08002 * 120.00028 * 354.09152 * 6 5 4 8 8 C 1.39979 * 120.00264 * 174.09471 * 6 5 4 9 9 N 1.30753 * 120.00150 * 5.98437 * 8 6 5 10 10 Si 1.86806 * 120.00377 * 185.98549 * 8 6 5 11 11 H 1.48493 * 109.46961 * 94.97856 * 10 8 6 12 12 H 1.48502 * 109.47071 * 214.98020 * 10 8 6 13 13 H 1.48502 * 109.46954 * 334.98157 * 10 8 6 14 14 N 1.32213 * 105.05991 * 359.59425 * 5 4 3 15 15 O 1.20761 * 111.32981 * 0.25573 * 14 5 4 16 16 H 1.08992 * 109.47144 * 60.00616 * 1 2 3 17 17 H 1.09002 * 109.46970 * 180.02562 * 1 2 3 18 18 H 1.09003 * 109.47057 * 299.99675 * 1 2 3 19 19 H 1.09003 * 109.47501 * 239.99693 * 2 1 3 20 20 H 1.09006 * 109.47329 * 119.99540 * 2 1 3 21 21 H 1.08006 * 128.35530 * 359.97438 * 4 3 2 22 22 H 0.96991 * 120.00652 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3052 2.1748 1.0864 5 6 2.7512 3.4549 0.5070 6 6 3.1625 4.6193 1.2024 7 1 3.0807 4.6628 2.2785 8 6 3.6747 5.7130 0.4947 9 7 3.6656 5.7080 -0.8128 10 14 4.3714 7.1798 1.4182 11 1 5.8426 7.0280 1.5507 12 1 4.0677 8.4258 0.6694 13 1 3.7576 7.2516 2.7685 14 7 2.6897 3.2794 -0.8020 15 8 2.2980 2.1711 -1.0787 16 1 -0.3633 0.5137 -0.8900 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 1.8934 -0.5139 -0.8900 20 1 1.8934 -0.5138 0.8901 21 1 2.2158 1.9058 2.1286 22 1 4.0208 6.4657 -1.3032 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213579859.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:43 Heat of formation + Delta-G solvation = 12.514450 kcal Electronic energy + Delta-G solvation = -9148.785912 eV Core-core repulsion = 7284.532806 eV Total energy + Delta-G solvation = -1864.253106 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.069 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -44.45640 -35.88082 -35.33822 -33.11036 -30.30146 -28.22922 -24.53863 -23.26460 -21.62908 -18.39139 -17.64041 -17.48960 -16.48127 -15.38500 -15.19934 -14.40532 -13.79647 -13.43536 -13.04801 -12.97202 -12.75472 -12.29586 -11.98660 -11.76933 -11.54829 -10.89981 -10.25141 -9.68373 -8.54251 -6.59745 1.28926 1.34608 1.36895 1.54099 2.07704 2.22732 3.02139 3.30201 4.08927 4.34864 4.47758 4.58669 4.69379 4.84732 5.04592 5.06404 5.26225 5.38328 5.41918 5.68837 6.26366 6.62141 6.87054 8.45504 8.67814 Molecular weight = 167.07amu Principal moments of inertia in cm(-1) A = 0.120587 B = 0.012572 C = 0.011790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 232.141866 B = 2226.608386 C = 2374.232586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.031 4.031 3 C -0.056 4.056 4 C -0.307 4.307 5 C 0.121 3.879 6 C -0.484 4.484 7 H 0.094 0.906 8 C 0.016 3.984 9 N -0.822 5.822 10 Si 1.002 2.998 11 H -0.263 1.263 12 H -0.270 1.270 13 H -0.250 1.250 14 N -0.453 5.453 15 O 0.015 5.985 16 H 0.043 0.957 17 H 0.096 0.904 18 H 0.050 0.950 19 H 0.091 0.909 20 H 0.107 0.893 21 H 0.165 0.835 22 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.713 -6.388 3.903 7.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.119 4.119 4 C -0.328 4.328 5 C -0.027 4.027 6 C -0.522 4.522 7 H 0.112 0.888 8 C -0.199 4.199 9 N -0.452 5.452 10 Si 0.821 3.179 11 H -0.188 1.188 12 H -0.195 1.195 13 H -0.173 1.173 14 N -0.183 5.183 15 O -0.032 6.032 16 H 0.062 0.938 17 H 0.114 0.886 18 H 0.069 0.931 19 H 0.109 0.891 20 H 0.125 0.875 21 H 0.183 0.817 22 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.469 -5.691 2.611 6.731 hybrid contribution 0.273 0.564 0.923 1.116 sum -2.196 -5.127 3.535 6.603 Atomic orbital electron populations 1.21732 0.93145 1.03415 1.01601 1.20153 0.96942 0.84867 1.04978 1.24885 1.01935 0.97849 0.87233 1.23577 1.14700 0.94502 1.00069 1.22348 0.96362 0.95333 0.88619 1.19140 1.40775 0.97370 0.94945 0.88822 1.27026 0.94402 1.02800 0.95700 1.70019 1.34890 1.31191 1.09068 0.84916 0.78802 0.75298 0.78890 1.18763 1.19456 1.17313 1.74799 1.29342 0.97093 1.17023 1.84502 1.64955 1.19396 1.34298 0.93810 0.88562 0.93116 0.89091 0.87509 0.81743 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.89 71.98 0.71 -2.85 14 2 C -0.03 -0.91 6.49 29.85 0.19 -0.72 14 3 C -0.06 -2.51 6.70 24.95 0.17 -2.34 14 4 C -0.31 -15.09 11.31 23.95 0.27 -14.82 14 5 C 0.12 7.30 7.00 42.37 0.30 7.60 14 6 C -0.48 -28.62 9.48 23.56 0.22 -28.39 14 7 H 0.09 5.08 7.85 -2.91 -0.02 5.06 14 8 C 0.02 0.89 5.49 85.28 0.47 1.36 14 9 N -0.82 -49.75 12.07 21.83 0.26 -49.48 14 10 Si 1.00 41.46 29.56 68.60 2.03 43.48 14 11 H -0.26 -10.43 7.11 99.48 0.71 -9.72 14 12 H -0.27 -10.68 7.11 99.48 0.71 -9.97 14 13 H -0.25 -9.68 7.11 99.48 0.71 -8.98 14 14 N -0.45 -28.44 10.51 -48.88 -0.51 -28.95 14 15 O 0.02 0.83 11.09 71.63 0.79 1.63 14 16 H 0.04 1.21 8.14 -2.39 -0.02 1.19 14 17 H 0.10 1.69 8.14 -2.39 -0.02 1.67 14 18 H 0.05 1.33 8.14 -2.39 -0.02 1.31 14 19 H 0.09 2.37 8.14 -2.39 -0.02 2.35 14 20 H 0.11 2.56 8.14 -2.38 -0.02 2.55 14 21 H 0.17 6.90 8.06 -2.91 -0.02 6.88 14 22 H 0.28 15.36 8.29 -92.72 -0.77 14.59 14 Total: -1.00 -72.68 205.82 6.11 -66.57 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.21 Total: 6.93 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 2.33 Total: -40.17 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -0.25 Total: -78.44 kcal Atomic # 8 Polarization: 0.83 SS G_CDS: 0.79 Total: 1.63 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -72.68 6.11 -66.57 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213579859.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.081 kcal (2) G-P(sol) polarization free energy of solvation -72.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds