Wall clock time and date at job start Mon Mar 30 2020 02:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47235 * 2 1 4 4 N 1.29850 * 127.31305 * 270.02377 * 3 2 1 5 5 O 1.20569 * 112.93891 * 179.97438 * 4 3 2 6 6 C 1.33767 * 113.30069 * 359.70451 * 5 4 3 7 7 C 1.39664 * 105.87038 * 0.46086 * 6 5 4 8 8 C 1.41473 * 128.74027 * 179.85300 * 7 6 5 9 9 H 1.08000 * 119.99918 * 171.42244 * 8 7 6 10 10 C 1.39732 * 119.99769 * 351.42955 * 8 7 6 11 11 N 1.31008 * 120.00009 * 352.11436 * 10 8 7 12 12 Si 1.86803 * 119.99929 * 172.11374 * 10 8 7 13 13 H 1.48494 * 109.47024 * 265.01045 * 12 10 8 14 14 H 1.48504 * 109.46949 * 25.01090 * 12 10 8 15 15 H 1.48500 * 109.47242 * 145.00737 * 12 10 8 16 16 H 1.08995 * 109.47559 * 179.97438 * 1 2 3 17 17 H 1.08996 * 109.47253 * 300.00764 * 1 2 3 18 18 H 1.09010 * 109.46981 * 60.00634 * 1 2 3 19 19 H 1.09003 * 109.47130 * 239.99618 * 2 1 3 20 20 H 1.09001 * 109.47154 * 119.99525 * 2 1 3 21 21 H 1.07995 * 127.06026 * 180.30924 * 6 5 4 22 22 H 0.97004 * 119.99581 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2943 2.1630 -1.0327 5 8 2.6833 3.2643 -0.7334 6 6 2.7466 3.4621 0.5880 7 6 2.3304 2.2645 1.1738 8 6 2.2170 1.9430 2.5469 9 1 1.7481 1.0179 2.8479 10 6 2.7117 2.8225 3.5134 11 7 3.4153 3.8663 3.1505 12 14 2.3697 2.5100 5.3231 13 1 1.1734 3.2837 5.7416 14 1 2.1222 1.0614 5.5371 15 1 3.5418 2.9362 6.1292 16 1 -0.3634 -1.0276 -0.0005 17 1 -0.3633 0.5139 0.8899 18 1 -0.3633 0.5138 -0.8901 19 1 1.8933 -0.5139 -0.8900 20 1 1.8933 -0.5138 0.8900 21 1 3.0582 4.3620 1.0972 22 1 3.7590 4.4767 3.8216 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213580106.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:48 Heat of formation + Delta-G solvation = 28.745897 kcal Electronic energy + Delta-G solvation = -9279.842563 eV Core-core repulsion = 7416.293305 eV Total energy + Delta-G solvation = -1863.549258 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.069 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.61058 -34.46554 -33.38358 -30.01993 -29.45598 -25.96213 -23.29630 -20.83658 -18.98496 -17.15166 -15.70782 -15.59151 -14.71200 -13.82419 -13.41111 -12.62691 -12.05928 -11.63102 -11.58183 -11.31541 -10.82040 -10.50394 -10.48665 -9.93236 -9.58941 -9.19530 -8.29549 -7.62018 -6.71644 -4.36451 2.97357 3.09899 3.13835 3.34768 3.88941 3.97389 5.25299 5.27601 5.60881 5.69149 6.04225 6.19462 6.26884 6.43873 6.78830 6.88175 7.18341 7.35943 7.51925 7.84651 8.40712 8.72797 8.89217 10.17712 10.33139 Molecular weight = 167.07amu Principal moments of inertia in cm(-1) A = 0.053519 B = 0.018244 C = 0.014110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.053157 B = 1534.423087 C = 1983.997015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.023 4.023 3 C -0.062 4.062 4 N -0.396 5.396 5 O 0.061 5.939 6 C -0.210 4.210 7 C -0.007 4.007 8 C -0.425 4.425 9 H 0.077 0.923 10 C 0.062 3.938 11 N -0.822 5.822 12 Si 0.921 3.079 13 H -0.271 1.271 14 H -0.264 1.264 15 H -0.278 1.278 16 H 0.049 0.951 17 H 0.058 0.942 18 H 0.048 0.952 19 H 0.059 0.941 20 H 0.074 0.926 21 H 0.214 0.786 22 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.505 -2.945 0.983 3.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.062 4.062 3 C -0.221 4.221 4 N -0.102 5.102 5 O -0.008 6.008 6 C -0.291 4.291 7 C -0.012 4.012 8 C -0.457 4.457 9 H 0.095 0.905 10 C -0.151 4.151 11 N -0.452 5.452 12 Si 0.746 3.254 13 H -0.197 1.197 14 H -0.188 1.188 15 H -0.204 1.204 16 H 0.068 0.932 17 H 0.078 0.922 18 H 0.067 0.933 19 H 0.077 0.923 20 H 0.092 0.908 21 H 0.230 0.770 22 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.449 -2.970 -0.198 3.855 hybrid contribution -0.053 -0.028 1.862 1.863 sum -2.502 -2.998 1.664 4.245 Atomic orbital electron populations 1.21690 0.95680 1.00447 1.02078 1.19511 0.95007 0.90090 1.01550 1.24541 1.09027 0.98102 0.90440 1.72932 1.17026 0.94237 1.25982 1.84123 1.64526 1.25329 1.26811 1.26430 1.20057 1.02973 0.79614 1.19927 0.97827 0.90299 0.93185 1.18657 1.33732 1.04907 0.88395 0.90488 1.25733 0.93279 0.94540 1.01521 1.69591 1.27434 1.12114 1.36020 0.86086 0.78539 0.79575 0.81219 1.19666 1.18808 1.20376 0.93187 0.92249 0.93284 0.92272 0.90789 0.77023 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.89 37.16 0.37 -2.13 14 2 C -0.02 -0.47 6.53 -27.88 -0.18 -0.66 14 3 C -0.06 -1.57 6.85 -79.61 -0.55 -2.11 14 4 N -0.40 -10.34 11.96 34.99 0.42 -9.92 14 5 O 0.06 1.61 11.06 17.98 0.20 1.80 14 6 C -0.21 -5.73 11.32 31.26 0.35 -5.37 14 7 C -0.01 -0.20 6.23 -104.32 -0.65 -0.85 14 8 C -0.43 -11.46 9.45 -37.79 -0.36 -11.81 14 9 H 0.08 1.97 7.85 -52.49 -0.41 1.56 14 10 C 0.06 1.59 5.47 -17.34 -0.09 1.49 14 11 N -0.82 -21.48 10.82 55.54 0.60 -20.88 14 12 Si 0.92 19.09 29.57 -169.99 -5.03 14.06 14 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 14 14 H -0.26 -5.38 7.11 56.52 0.40 -4.98 14 15 H -0.28 -5.66 7.11 56.52 0.40 -5.26 14 16 H 0.05 0.72 8.14 -51.93 -0.42 0.30 14 17 H 0.06 1.11 8.14 -51.93 -0.42 0.68 14 18 H 0.05 0.87 8.14 -51.92 -0.42 0.45 14 19 H 0.06 1.11 8.14 -51.93 -0.42 0.69 14 20 H 0.07 1.46 8.14 -51.93 -0.42 1.03 14 21 H 0.21 5.69 6.34 -52.49 -0.33 5.36 14 22 H 0.28 6.63 8.30 -40.82 -0.34 6.29 14 LS Contribution 203.67 15.07 3.07 3.07 Total: -1.00 -28.49 203.67 -3.84 -32.33 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -1.99 Total: 0.97 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -1.11 Total: -21.44 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 1.02 Total: -30.80 kcal Atomic # 8 Polarization: 1.61 SS G_CDS: 0.20 Total: 1.80 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -28.49 -3.84 -32.33 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213580106.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.078 kcal (2) G-P(sol) polarization free energy of solvation -28.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds