Wall clock time and date at job start Mon Mar 30 2020 01:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31102 * 1 3 3 Si 1.86798 * 120.00267 * 2 1 4 4 H 1.48502 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47334 * 300.00663 * 3 2 1 6 6 H 1.48512 * 109.46907 * 60.00164 * 3 2 1 7 7 C 1.39254 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99666 * 179.97438 * 7 2 1 9 9 N 1.37089 * 120.00206 * 359.97438 * 7 2 1 10 10 C 1.36449 * 124.95964 * 180.24238 * 9 7 2 11 11 C 1.35119 * 107.17196 * 180.14704 * 10 9 7 12 12 C 1.41996 * 105.58042 * 359.64469 * 11 10 9 13 13 C 1.46859 * 126.45218 * 180.24780 * 12 11 10 14 14 O 1.21311 * 119.99896 * 179.97438 * 13 12 11 15 15 N 1.28489 * 124.95814 * 359.97438 * 9 7 2 16 16 H 0.97006 * 119.99762 * 0.02562 * 1 2 3 17 17 H 1.07997 * 126.41748 * 0.05408 * 10 9 7 18 18 H 1.08002 * 127.21231 * 179.91270 * 11 10 9 19 19 H 1.07995 * 120.00169 * 0.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2451 1.6177 0.0000 4 1 3.7051 1.3463 -0.0006 5 1 1.8863 2.3965 -1.2124 6 1 1.8863 2.3964 1.2126 7 6 2.0072 -1.2060 -0.0005 8 1 3.0873 -1.2060 -0.0010 9 7 1.3218 -2.3932 -0.0005 10 6 1.8993 -3.6295 0.0037 11 6 0.8986 -4.5373 -0.0012 12 6 -0.3029 -3.7805 0.0000 13 6 -1.6708 -4.3150 0.0011 14 8 -2.6181 -3.5572 0.0025 15 7 0.0417 -2.5043 0.0004 16 1 -0.4850 0.8401 -0.0004 17 1 2.9581 -3.8425 0.0084 18 1 0.9927 -5.6132 -0.0011 19 1 -1.8334 -5.3826 0.0015 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218519064.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:05 Heat of formation + Delta-G solvation = 43.362083 kcal Electronic energy + Delta-G solvation = -8884.773883 eV Core-core repulsion = 6983.743998 eV Total energy + Delta-G solvation = -1901.029885 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 166.048 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.82588 -37.45788 -33.70543 -30.69583 -29.01746 -26.11279 -23.15412 -20.23108 -19.19309 -17.58139 -15.84586 -14.77798 -14.42265 -14.19990 -13.94849 -12.72976 -12.72626 -11.82516 -11.62954 -11.29613 -11.05059 -10.52757 -9.49696 -8.93005 -8.72039 -8.05776 -7.66484 -6.64077 -4.54560 2.55833 2.94574 3.01555 3.08314 3.64588 3.77326 4.55591 4.74059 4.99603 5.37516 6.15161 6.29250 6.63288 6.76223 6.99912 7.19873 7.67720 7.96700 8.44053 8.58655 9.18928 9.99099 10.28485 Molecular weight = 166.05amu Principal moments of inertia in cm(-1) A = 0.073411 B = 0.016797 C = 0.013736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.324433 B = 1666.535444 C = 2038.017261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.049 3.951 3 Si 0.939 3.061 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.346 4.346 8 H 0.123 0.877 9 N -0.068 5.068 10 C -0.125 4.125 11 C -0.211 4.211 12 C -0.180 4.180 13 C 0.421 3.579 14 O -0.486 6.486 15 N -0.208 5.208 16 H 0.279 0.721 17 H 0.151 0.849 18 H 0.132 0.868 19 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.081 -2.714 0.004 4.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.171 4.171 3 Si 0.762 3.238 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.479 4.479 8 H 0.141 0.859 9 N 0.152 4.848 10 C -0.264 4.264 11 C -0.240 4.240 12 C -0.322 4.322 13 C 0.281 3.719 14 O -0.360 6.360 15 N -0.055 5.055 16 H 0.090 0.910 17 H 0.168 0.832 18 H 0.150 0.850 19 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.893 -1.182 0.004 3.126 hybrid contribution 1.019 -0.243 0.000 1.048 sum 3.912 -1.425 0.004 4.164 Atomic orbital electron populations 1.70180 1.06310 1.28489 1.33256 1.25751 0.95696 1.00618 0.95017 0.85703 0.79661 0.79813 0.78649 1.18484 1.19717 1.19712 1.20156 0.92241 0.80340 1.55210 0.85934 1.41987 1.02818 1.05167 1.34786 1.22515 0.98887 0.85582 1.19375 1.21349 0.91974 0.98258 1.12454 1.22734 0.96012 0.91899 1.21577 1.22715 0.85298 0.93169 0.70720 1.90459 1.44601 1.63448 1.37458 1.74661 0.94760 1.17062 1.18984 0.91032 0.83151 0.84965 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.46 11.79 55.51 0.65 -20.81 13 2 C 0.05 1.26 5.50 -17.49 -0.10 1.16 13 3 Si 0.94 18.76 29.55 -169.99 -5.02 13.73 13 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 13 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 13 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 13 7 C -0.35 -9.13 10.18 -14.82 -0.15 -9.28 13 8 H 0.12 2.86 7.83 -52.48 -0.41 2.45 13 9 N -0.07 -1.88 3.44 -11.54 -0.04 -1.92 13 10 C -0.13 -2.95 11.42 -16.61 -0.19 -3.14 13 11 C -0.21 -4.68 10.99 -39.25 -0.43 -5.11 13 12 C -0.18 -4.61 7.12 -82.78 -0.59 -5.20 13 13 C 0.42 9.37 11.71 34.22 0.40 9.77 13 14 O -0.49 -12.72 17.92 5.53 0.10 -12.63 13 15 N -0.21 -6.13 9.75 33.39 0.33 -5.81 13 16 H 0.28 7.20 8.30 -40.82 -0.34 6.86 13 17 H 0.15 2.95 8.06 -52.49 -0.42 2.53 13 18 H 0.13 2.33 8.06 -52.49 -0.42 1.91 13 19 H 0.09 1.47 8.06 -52.49 -0.42 1.04 13 LS Contribution 190.99 15.07 2.88 2.88 Total: -1.00 -33.07 190.99 -2.98 -36.04 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -0.81 Total: 0.30 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.06 Total: -11.79 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: 0.94 Total: -28.53 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.10 Total: -12.63 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 2.88 Total: 2.88 kcal Total: -33.07 -2.98 -36.04 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218519064.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.404 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds