Wall clock time and date at job start Mon Mar 30 2020 01:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31102 * 1 3 3 Si 1.86798 * 120.00267 * 2 1 4 4 H 1.48502 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47334 * 300.00663 * 3 2 1 6 6 H 1.48512 * 109.46907 * 60.00164 * 3 2 1 7 7 C 1.39254 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99666 * 179.97438 * 7 2 1 9 9 N 1.37089 * 120.00206 * 359.97438 * 7 2 1 10 10 C 1.36449 * 124.95964 * 180.24238 * 9 7 2 11 11 C 1.35119 * 107.17196 * 180.14704 * 10 9 7 12 12 C 1.41996 * 105.58042 * 359.64469 * 11 10 9 13 13 C 1.46859 * 126.45218 * 180.24780 * 12 11 10 14 14 O 1.21311 * 119.99896 * 179.97438 * 13 12 11 15 15 N 1.28489 * 124.95814 * 359.97438 * 9 7 2 16 16 H 0.97006 * 119.99762 * 0.02562 * 1 2 3 17 17 H 1.07997 * 126.41748 * 0.05408 * 10 9 7 18 18 H 1.08002 * 127.21231 * 179.91270 * 11 10 9 19 19 H 1.07995 * 120.00169 * 0.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3110 0.0000 0.0000 3 14 2.2451 1.6177 0.0000 4 1 3.7051 1.3463 -0.0006 5 1 1.8863 2.3965 -1.2124 6 1 1.8863 2.3964 1.2126 7 6 2.0072 -1.2060 -0.0005 8 1 3.0873 -1.2060 -0.0010 9 7 1.3218 -2.3932 -0.0005 10 6 1.8993 -3.6295 0.0037 11 6 0.8986 -4.5373 -0.0012 12 6 -0.3029 -3.7805 0.0000 13 6 -1.6708 -4.3150 0.0011 14 8 -2.6181 -3.5572 0.0025 15 7 0.0417 -2.5043 0.0004 16 1 -0.4850 0.8401 -0.0004 17 1 2.9581 -3.8425 0.0084 18 1 0.9927 -5.6132 -0.0011 19 1 -1.8334 -5.3826 0.0015 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218519064.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:05 Heat of formation + Delta-G solvation = 19.455240 kcal Electronic energy + Delta-G solvation = -8885.810562 eV Core-core repulsion = 6983.743998 eV Total energy + Delta-G solvation = -1902.066564 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 166.048 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.71919 -39.32615 -35.60824 -32.62373 -30.89893 -28.01917 -25.03316 -22.05926 -21.04883 -19.47513 -17.73102 -16.52732 -16.18684 -16.14098 -15.77871 -14.64777 -14.41414 -13.62217 -13.41335 -12.93246 -12.91547 -12.03335 -11.34362 -10.81627 -10.55786 -10.00186 -9.55653 -8.54622 -6.53866 0.77535 1.34691 1.37838 1.58073 1.86770 2.10590 2.72742 2.95818 3.08031 3.77137 4.40870 4.62417 4.87709 5.07434 5.11823 5.38911 5.81877 6.15491 6.57367 6.83148 7.30660 8.07253 8.41496 Molecular weight = 166.05amu Principal moments of inertia in cm(-1) A = 0.073411 B = 0.016797 C = 0.013736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.324433 B = 1666.535444 C = 2038.017261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C -0.004 4.004 3 Si 1.023 2.977 4 H -0.237 1.237 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.377 4.377 8 H 0.147 0.853 9 N -0.096 5.096 10 C -0.135 4.135 11 C -0.190 4.190 12 C -0.213 4.213 13 C 0.428 3.572 14 O -0.535 6.535 15 N -0.274 5.274 16 H 0.279 0.721 17 H 0.187 0.813 18 H 0.185 0.815 19 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 -3.832 0.005 6.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.217 4.217 3 Si 0.841 3.159 4 H -0.159 1.159 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.509 4.509 8 H 0.164 0.836 9 N 0.124 4.876 10 C -0.273 4.273 11 C -0.219 4.219 12 C -0.356 4.356 13 C 0.291 3.709 14 O -0.411 6.411 15 N -0.121 5.121 16 H 0.089 0.911 17 H 0.204 0.796 18 H 0.203 0.797 19 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.489 -2.325 0.005 5.055 hybrid contribution 0.553 -0.076 0.000 0.558 sum 5.042 -2.401 0.005 5.584 Atomic orbital electron populations 1.70370 1.08769 1.29509 1.35819 1.27030 0.96376 1.04777 0.93499 0.84492 0.79158 0.73902 0.78369 1.15949 1.19600 1.19591 1.20908 0.93549 0.80891 1.55536 0.83608 1.42318 1.02718 1.06655 1.35909 1.23340 1.01116 0.84628 1.18225 1.21923 0.89841 1.00503 1.09622 1.23657 0.98849 0.91598 1.21499 1.23799 0.83218 0.95768 0.68115 1.90448 1.45629 1.65368 1.39654 1.74577 0.96377 1.19921 1.21185 0.91103 0.79582 0.79740 0.81414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.23 11.79 21.70 0.26 -47.97 13 2 C 0.00 -0.19 5.50 85.05 0.47 0.28 13 3 Si 1.02 38.50 29.55 68.60 2.03 40.52 13 4 H -0.24 -7.88 7.11 99.48 0.71 -7.18 13 5 H -0.27 -10.03 7.11 99.48 0.71 -9.32 13 6 H -0.27 -10.03 7.11 99.48 0.71 -9.32 13 7 C -0.38 -19.95 10.18 84.12 0.86 -19.10 13 8 H 0.15 6.65 7.83 -2.91 -0.02 6.63 13 9 N -0.10 -5.33 3.44 -190.42 -0.65 -5.99 13 10 C -0.13 -6.07 11.42 83.26 0.95 -5.12 13 11 C -0.19 -7.84 10.99 22.48 0.25 -7.59 13 12 C -0.21 -10.68 7.12 42.28 0.30 -10.38 13 13 C 0.43 18.26 11.71 70.08 0.82 19.08 13 14 O -0.53 -28.09 17.92 -3.12 -0.06 -28.15 13 15 N -0.27 -16.47 9.75 -48.29 -0.47 -16.94 13 16 H 0.28 15.13 8.30 -92.70 -0.77 14.36 13 17 H 0.19 6.69 8.06 -2.91 -0.02 6.66 13 18 H 0.19 5.44 8.06 -2.91 -0.02 5.42 13 19 H 0.17 4.57 8.06 -2.91 -0.02 4.55 13 Total: -1.00 -75.55 190.99 6.00 -69.55 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.26 Total: 11.80 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 3.64 Total: -22.82 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -0.87 Total: -70.90 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.06 Total: -28.15 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.52 kcal Total: -75.55 6.00 -69.55 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218519064.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.001 kcal (2) G-P(sol) polarization free energy of solvation -75.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds