Wall clock time and date at job start Mon Mar 30 2020 01:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31231 * 1 3 3 Si 1.86801 * 119.99808 * 2 1 4 4 H 1.48500 * 109.47092 * 274.97495 * 3 2 1 5 5 H 1.48499 * 109.47320 * 34.98127 * 3 2 1 6 6 H 1.48505 * 109.46994 * 154.98342 * 3 2 1 7 7 C 1.39076 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99676 * 185.86951 * 7 2 1 9 9 N 1.37258 * 120.00338 * 5.58664 * 7 2 1 10 10 C 1.34974 * 125.75412 * 174.32203 * 9 7 2 11 11 C 1.38427 * 107.27931 * 179.97438 * 10 9 7 12 12 C 1.46598 * 126.46158 * 179.97438 * 11 10 9 13 13 O 1.21322 * 120.00270 * 0.02562 * 12 11 10 14 14 C 1.41783 * 107.07470 * 359.97438 * 11 10 9 15 15 N 1.30450 * 108.09660 * 359.76118 * 14 11 10 16 16 H 0.96997 * 119.99719 * 0.02562 * 1 2 3 17 17 H 1.08003 * 126.35880 * 359.95913 * 10 9 7 18 18 H 1.08004 * 119.99958 * 180.02562 * 12 11 10 19 19 H 1.08001 * 125.95278 * 179.97438 * 14 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3123 0.0000 0.0000 3 14 2.2463 1.6178 0.0000 4 1 2.3886 2.1072 -1.3948 5 1 1.5003 2.6200 0.8027 6 1 3.5926 1.4121 0.5921 7 6 2.0076 -1.2045 -0.0005 8 1 3.0834 -1.2069 0.0951 9 7 1.3262 -2.3903 -0.1168 10 6 1.8856 -3.6126 -0.2386 11 6 0.8530 -4.5303 -0.3272 12 6 0.9884 -5.9829 -0.4714 13 8 2.0906 -6.4872 -0.5235 14 6 -0.3602 -3.8005 -0.2521 15 7 -0.0652 -2.5364 -0.1223 16 1 -0.4849 0.8400 -0.0004 17 1 2.9425 -3.8336 -0.2628 18 1 0.1070 -6.6041 -0.5314 19 1 -1.3552 -4.2186 -0.2916 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219164149.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:55 Heat of formation + Delta-G solvation = 13.852019 kcal Electronic energy + Delta-G solvation = -8766.083347 eV Core-core repulsion = 6863.773809 eV Total energy + Delta-G solvation = -1902.309538 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 166.048 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.55801 -39.10938 -35.59153 -32.72163 -30.67312 -27.60337 -24.40700 -22.49305 -20.66423 -19.52606 -17.58513 -16.57155 -16.01513 -15.59715 -15.36939 -14.99974 -14.47287 -13.62186 -13.25350 -12.95657 -12.84528 -12.10638 -11.41649 -11.21088 -10.34219 -10.25682 -9.31959 -8.61955 -6.46864 0.72492 1.37139 1.38236 1.55228 1.81863 2.06641 2.67501 2.71733 2.97391 3.87464 4.32998 4.57323 4.84751 4.85620 5.11463 5.46969 5.78712 6.12642 6.59501 6.95609 7.25066 7.50338 8.36948 Molecular weight = 166.05amu Principal moments of inertia in cm(-1) A = 0.111233 B = 0.013582 C = 0.012166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 251.663334 B = 2060.991808 C = 2300.952090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.004 3.996 3 Si 1.020 2.980 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.248 1.248 7 C -0.369 4.369 8 H 0.135 0.865 9 N -0.156 5.156 10 C -0.023 4.023 11 C -0.394 4.394 12 C 0.427 3.573 13 O -0.553 6.553 14 C 0.025 3.975 15 N -0.320 5.320 16 H 0.283 0.717 17 H 0.164 0.836 18 H 0.141 0.859 19 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.268 -0.409 -0.270 0.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.210 4.210 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.172 1.172 7 C -0.500 4.500 8 H 0.152 0.848 9 N 0.082 4.918 10 C -0.179 4.179 11 C -0.409 4.409 12 C 0.294 3.706 13 O -0.434 6.434 14 C -0.155 4.155 15 N -0.146 5.146 16 H 0.093 0.907 17 H 0.181 0.819 18 H 0.157 0.843 19 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 0.142 0.714 -0.156 0.745 hybrid contribution 0.467 -0.064 -0.048 0.473 sum 0.608 0.651 -0.203 0.914 Atomic orbital electron populations 1.70295 1.08248 1.29798 1.35206 1.26889 0.96587 1.04201 0.93353 0.84562 0.78445 0.73911 0.79246 1.18849 1.19301 1.17156 1.20734 0.93536 0.81470 1.54240 0.84780 1.44935 1.04261 1.05505 1.37075 1.23025 0.99485 0.85187 1.10241 1.21198 0.92515 0.97590 1.29584 1.23328 0.92378 0.87007 0.67915 1.90408 1.33275 1.77011 1.42737 1.24651 0.99475 0.90978 1.00406 1.77866 0.91182 1.18463 1.27076 0.90687 0.81860 0.84290 0.77599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.81 11.81 21.67 0.26 -43.55 13 2 C 0.00 0.18 5.50 84.98 0.47 0.65 13 3 Si 1.02 37.22 29.56 68.60 2.03 39.25 13 4 H -0.26 -9.34 7.11 99.48 0.71 -8.63 13 5 H -0.27 -9.45 7.11 99.48 0.71 -8.74 13 6 H -0.25 -8.43 7.11 99.48 0.71 -7.73 13 7 C -0.37 -19.52 10.21 84.04 0.86 -18.66 13 8 H 0.13 6.38 7.84 -2.91 -0.02 6.36 13 9 N -0.16 -8.59 3.68 -189.03 -0.70 -9.28 13 10 C -0.02 -1.15 11.25 84.25 0.95 -0.20 13 11 C -0.39 -17.54 6.12 -20.18 -0.12 -17.66 13 12 C 0.43 15.76 11.70 70.00 0.82 16.58 13 13 O -0.55 -24.18 17.72 -3.16 -0.06 -24.23 13 14 C 0.03 1.12 12.04 85.77 1.03 2.15 13 15 N -0.32 -17.53 10.31 -55.94 -0.58 -18.11 13 16 H 0.28 13.88 8.30 -92.71 -0.77 13.11 13 17 H 0.16 7.52 8.06 -2.91 -0.02 7.49 13 18 H 0.14 3.53 8.06 -2.91 -0.02 3.51 13 19 H 0.21 7.01 8.06 -2.91 -0.02 6.99 13 Total: -1.00 -66.92 191.53 6.21 -60.70 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 1.26 Total: 12.36 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 4.00 Total: -17.14 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -1.02 Total: -70.95 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.06 Total: -24.23 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Total: -66.92 6.21 -60.70 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219164149.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.555 kcal (2) G-P(sol) polarization free energy of solvation -66.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds