Wall clock time and date at job start Mon Mar 30 2020 01:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30722 * 1 3 3 Si 1.86803 * 120.00238 * 2 1 4 4 H 1.48496 * 109.47226 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46804 * 299.99652 * 3 2 1 6 6 H 1.48498 * 109.47118 * 59.99137 * 3 2 1 7 7 C 1.40106 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00288 * 180.02562 * 7 2 1 9 9 C 1.40968 * 120.00179 * 0.02562 * 7 2 1 10 10 N 1.33906 * 120.25376 * 0.02562 * 9 7 2 11 11 C 1.31726 * 119.87064 * 179.97438 * 10 9 7 12 12 C 1.38935 * 120.41927 * 359.97438 * 11 10 9 13 13 N 1.32289 * 120.53604 * 0.02562 * 12 11 10 14 14 C 1.32397 * 120.11022 * 0.02562 * 13 12 11 15 15 O 1.35343 * 120.21074 * 179.97438 * 14 13 12 16 16 H 0.97001 * 120.00152 * 0.02562 * 1 2 3 17 17 H 1.07996 * 119.78505 * 180.27850 * 11 10 9 18 18 H 1.07996 * 119.72925 * 180.02562 * 12 11 10 19 19 H 0.96696 * 113.99981 * 89.99791 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 3.7013 1.3463 0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8824 2.3965 1.2124 7 6 2.0078 -1.2134 0.0005 8 1 3.0879 -1.2134 0.0010 9 6 1.3030 -2.4342 0.0005 10 7 -0.0361 -2.4402 -0.0005 11 6 -0.6870 -3.5854 -0.0010 12 6 0.0069 -4.7890 -0.0010 13 7 1.3297 -4.8021 0.0000 14 6 2.0053 -3.6635 0.0016 15 8 3.3587 -3.6746 0.0031 16 1 -0.4850 0.8400 -0.0004 17 1 -1.7670 -3.5886 -0.0064 18 1 -0.5380 -5.7214 -0.0018 19 1 3.7530 -3.6773 -0.8798 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238711624.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:21 Heat of formation + Delta-G solvation = -28.499679 kcal Electronic energy + Delta-G solvation = -8977.627886 eV Core-core repulsion = 7073.481841 eV Total energy + Delta-G solvation = -1904.146045 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 166.048 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.98973 -37.73644 -36.03092 -33.74861 -31.36747 -27.97675 -24.45491 -23.79457 -19.62263 -19.27095 -18.19279 -16.92351 -16.46581 -15.89029 -14.83491 -14.32435 -13.85924 -13.36723 -13.00969 -12.80796 -12.22664 -11.94364 -11.76304 -11.53031 -11.00067 -9.70595 -9.35977 -8.43821 -6.69897 0.50326 0.96174 1.40478 1.51716 1.57849 2.17546 2.69974 3.22039 3.68715 4.13297 4.33598 4.63442 4.93075 5.04593 5.11408 5.70343 6.07321 6.26690 6.60063 7.05544 7.27347 7.81265 8.23780 Molecular weight = 166.05amu Principal moments of inertia in cm(-1) A = 0.070245 B = 0.018949 C = 0.015022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.510606 B = 1477.269806 C = 1863.436303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.018 3.982 3 Si 0.999 3.001 4 H -0.251 1.251 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.423 4.423 8 H 0.102 0.898 9 C 0.166 3.834 10 N -0.481 5.481 11 C 0.071 3.929 12 C -0.106 4.106 13 N -0.462 5.462 14 C 0.103 3.897 15 O -0.481 6.481 16 H 0.289 0.711 17 H 0.169 0.831 18 H 0.168 0.832 19 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.936 2.107 -1.685 2.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.206 4.206 3 Si 0.817 3.183 4 H -0.174 1.174 5 H -0.184 1.184 6 H -0.188 1.188 7 C -0.453 4.453 8 H 0.120 0.880 9 C 0.040 3.960 10 N -0.201 5.201 11 C -0.098 4.098 12 C -0.265 4.265 13 N -0.185 5.185 14 C -0.087 4.087 15 O -0.285 6.285 16 H 0.100 0.900 17 H 0.186 0.814 18 H 0.185 0.815 19 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.742 2.268 -1.073 2.616 hybrid contribution 0.225 0.260 -0.465 0.579 sum 0.967 2.528 -1.538 3.113 Atomic orbital electron populations 1.70153 1.09186 1.30309 1.26427 1.27224 0.95884 1.05071 0.92374 0.84908 0.79389 0.74798 0.79188 1.17449 1.18437 1.18837 1.20090 0.95676 0.89731 1.39839 0.88026 1.19902 0.89898 0.93561 0.92676 1.69559 1.07131 1.26709 1.16671 1.24074 1.01864 0.89750 0.94094 1.23036 0.88795 0.99450 1.15216 1.67225 1.10537 1.31438 1.09319 1.20103 0.84624 0.89290 1.14667 1.84631 1.14579 1.95862 1.33434 0.90018 0.81373 0.81514 0.76006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.03 11.48 21.85 0.25 -37.78 13 2 C 0.02 0.90 5.50 85.31 0.47 1.36 13 3 Si 1.00 35.87 29.56 68.60 2.03 37.89 13 4 H -0.25 -8.72 7.11 99.48 0.71 -8.01 13 5 H -0.26 -8.83 7.11 99.48 0.71 -8.12 13 6 H -0.26 -9.14 7.11 99.48 0.71 -8.43 13 7 C -0.42 -22.46 8.96 23.39 0.21 -22.25 13 8 H 0.10 5.08 7.34 -2.91 -0.02 5.06 13 9 C 0.17 9.34 6.56 40.32 0.26 9.60 13 10 N -0.48 -26.58 8.04 -188.17 -1.51 -28.09 13 11 C 0.07 3.33 11.21 84.88 0.95 4.28 13 12 C -0.11 -4.85 11.22 84.79 0.95 -3.90 13 13 N -0.46 -23.74 10.51 -306.11 -3.22 -26.95 13 14 C 0.10 5.48 7.81 85.43 0.67 6.15 13 15 O -0.48 -22.80 12.70 -86.33 -1.10 -23.89 13 16 H 0.29 13.10 8.29 -92.71 -0.77 12.33 13 17 H 0.17 6.46 8.06 -2.91 -0.02 6.43 13 18 H 0.17 6.15 8.06 -2.91 -0.02 6.13 13 19 H 0.38 14.25 9.06 -74.06 -0.67 13.58 13 Total: -1.00 -65.21 185.67 0.58 -64.63 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.61 Total: 18.96 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 3.51 Total: -4.76 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -4.48 Total: -92.83 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -1.10 Total: -23.89 kcal Atomic # 14 Polarization: 35.87 SS G_CDS: 2.03 Total: 37.89 kcal Total: -65.21 0.58 -64.63 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238711624.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.132 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds