Wall clock time and date at job start Mon Mar 30 2020 02:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36784 * 120.00005 * 2 1 4 4 H 1.08004 * 119.99711 * 202.81975 * 3 2 1 5 5 C 1.38699 * 119.99958 * 22.82324 * 3 2 1 6 6 N 1.31666 * 120.00170 * 11.10566 * 5 3 2 7 7 Si 1.86804 * 119.99765 * 191.10495 * 5 3 2 8 8 H 1.48497 * 109.47463 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46906 * 120.00468 * 7 5 3 10 10 H 1.48501 * 109.47046 * 239.99915 * 7 5 3 11 11 C 1.39904 * 119.99841 * 180.02562 * 2 1 3 12 12 C 1.41397 * 126.38252 * 359.97438 * 11 2 1 13 13 C 1.34755 * 107.45726 * 180.02562 * 12 11 2 14 14 N 1.36386 * 108.43610 * 359.97438 * 13 12 11 15 15 H 0.97001 * 125.58821 * 179.97438 * 14 13 12 16 16 C 1.35670 * 126.38113 * 180.28487 * 11 2 1 17 17 H 1.09001 * 109.46637 * 273.47786 * 1 2 3 18 18 H 1.09005 * 109.47071 * 33.47817 * 1 2 3 19 19 H 1.08995 * 109.47297 * 153.47615 * 1 2 3 20 20 H 0.97005 * 119.99949 * 179.97438 * 6 5 3 21 21 H 1.07996 * 126.26863 * 0.03707 * 12 11 2 22 22 H 1.08000 * 125.78042 * 179.97438 * 13 12 11 23 23 H 1.07997 * 125.97655 * 0.02699 * 16 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1846 0.0000 4 1 3.1656 1.2211 -0.3628 5 6 1.5369 2.3387 0.4659 6 7 0.3891 2.2626 1.1065 7 14 2.3411 4.0012 0.1846 8 1 3.6152 3.8159 -0.5553 9 1 1.4294 4.8640 -0.6088 10 1 2.6175 4.6452 1.4938 11 6 2.1645 -1.2116 -0.0005 12 6 1.5980 -2.5071 -0.0006 13 6 2.6138 -3.3926 -0.0006 14 7 3.7891 -2.7006 -0.0012 15 1 4.6758 -3.0940 -0.0009 16 6 3.5128 -1.3625 0.0048 17 1 -0.3632 0.0623 1.0258 18 1 -0.3633 0.8572 -0.5669 19 1 -0.3633 -0.9194 -0.4589 20 1 -0.0388 3.0698 1.4327 21 1 0.5443 -2.7436 -0.0008 22 1 2.5142 -4.4680 -0.0003 23 1 4.2405 -0.5644 0.0107 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258673113.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:39 Heat of formation + Delta-G solvation = 45.631015 kcal Electronic energy + Delta-G solvation = -9195.920000 eV Core-core repulsion = 7430.821598 eV Total energy + Delta-G solvation = -1765.098402 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 166.080 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.41167 -37.41816 -33.50191 -30.63844 -29.37847 -27.76217 -24.86568 -21.55991 -20.26245 -18.96907 -18.39365 -16.70492 -15.49403 -15.10839 -14.92005 -14.18304 -14.07216 -13.53547 -13.22307 -12.88346 -12.54616 -12.47150 -12.05583 -11.86394 -11.12117 -10.28838 -8.99371 -8.17922 -7.83146 -5.45633 1.42570 1.44059 1.57285 1.74385 2.39184 2.54431 2.88188 3.30440 3.70936 4.57386 4.69418 4.83398 5.02582 5.14904 5.40384 5.49852 5.53784 5.58059 6.08558 6.34940 6.48981 7.02641 7.26994 7.82439 8.16376 9.01356 Molecular weight = 166.08amu Principal moments of inertia in cm(-1) A = 0.080149 B = 0.015409 C = 0.013260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.267239 B = 1816.667841 C = 2111.103190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.513 5.513 3 C -0.294 4.294 4 H 0.079 0.921 5 C -0.041 4.041 6 N -0.931 5.931 7 Si 0.987 3.013 8 H -0.264 1.264 9 H -0.282 1.282 10 H -0.284 1.284 11 C 0.106 3.894 12 C -0.296 4.296 13 C 0.030 3.970 14 N -0.547 5.547 15 H 0.426 0.574 16 C -0.156 4.156 17 H 0.017 0.983 18 H 0.032 0.968 19 H 0.038 0.962 20 H 0.258 0.742 21 H 0.125 0.875 22 H 0.204 0.796 23 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -7.434 -2.330 9.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.217 5.217 3 C -0.424 4.424 4 H 0.097 0.903 5 C -0.238 4.238 6 N -0.575 5.575 7 Si 0.813 3.187 8 H -0.188 1.188 9 H -0.208 1.208 10 H -0.211 1.211 11 C -0.002 4.002 12 C -0.327 4.327 13 C -0.105 4.105 14 N -0.147 5.147 15 H 0.264 0.736 16 C -0.289 4.289 17 H 0.035 0.965 18 H 0.051 0.949 19 H 0.057 0.943 20 H 0.067 0.933 21 H 0.143 0.857 22 H 0.220 0.780 23 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.649 -7.164 -2.265 8.836 hybrid contribution 0.288 1.038 0.098 1.082 sum 4.937 -6.126 -2.167 8.161 Atomic orbital electron populations 1.20786 0.81265 0.97185 0.98609 1.41652 1.03210 1.01042 1.75753 1.19639 0.99087 0.86012 1.37613 0.90291 1.26043 0.98006 1.02780 0.96940 1.70282 1.19145 1.28687 1.39354 0.84924 0.78184 0.78094 0.77498 1.18767 1.20831 1.21075 1.17981 0.92227 0.87129 1.02865 1.20669 0.99114 0.91253 1.21616 1.22039 0.83721 0.98307 1.06430 1.41329 1.08279 1.04656 1.60419 0.73594 1.20696 0.94890 0.85961 1.27372 0.96498 0.94912 0.94327 0.93312 0.85712 0.77965 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.91 8.75 127.77 1.12 10.03 14 2 N -0.51 -28.97 3.14 -535.57 -1.68 -30.65 14 3 C -0.29 -17.17 9.28 84.03 0.78 -16.39 14 4 H 0.08 4.47 6.87 -2.91 -0.02 4.45 14 5 C -0.04 -2.37 5.12 84.83 0.43 -1.93 14 6 N -0.93 -55.84 10.60 21.63 0.23 -55.61 14 7 Si 0.99 45.18 29.57 68.60 2.03 47.21 14 8 H -0.26 -11.45 7.11 99.48 0.71 -10.74 14 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 14 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 14 11 C 0.11 5.26 6.67 38.04 0.25 5.52 14 12 C -0.30 -12.24 9.97 22.25 0.22 -12.02 14 13 C 0.03 0.94 11.92 83.19 0.99 1.93 14 14 N -0.55 -17.57 6.08 -193.78 -1.18 -18.74 14 15 H 0.43 9.63 8.96 -92.71 -0.83 8.80 14 16 C -0.16 -6.80 11.17 83.35 0.93 -5.87 14 17 H 0.02 0.95 7.45 -2.39 -0.02 0.94 14 18 H 0.03 1.82 7.16 -2.38 -0.02 1.81 14 19 H 0.04 1.80 6.78 -2.39 -0.02 1.79 14 20 H 0.26 14.65 8.31 -92.70 -0.77 13.88 14 21 H 0.12 4.92 7.30 -2.91 -0.02 4.90 14 22 H 0.20 4.15 8.06 -2.91 -0.02 4.12 14 23 H 0.14 6.23 7.29 -2.91 -0.02 6.20 14 Total: -1.00 -68.97 201.79 4.51 -64.46 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.38 Total: 12.07 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 4.73 Total: -18.74 kcal Atomic # 7 Polarization: -102.37 SS G_CDS: -2.63 Total: -105.01 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -68.97 4.51 -64.46 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258673113.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.088 kcal (2) G-P(sol) polarization free energy of solvation -68.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds