Wall clock time and date at job start Mon Mar 30 2020 02:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00084 * 2 1 4 4 H 1.48499 * 109.46815 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47401 * 300.00722 * 3 2 1 6 6 H 1.48505 * 109.46949 * 60.00794 * 3 2 1 7 7 C 1.37884 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99740 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99893 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47018 * 59.99730 * 9 7 2 11 11 N 1.46906 * 109.47187 * 300.00281 * 9 7 2 12 12 C 1.50697 * 109.47065 * 180.02562 * 9 7 2 13 13 C 1.39871 * 126.04228 * 79.68860 * 12 9 7 14 14 N 1.30832 * 108.20253 * 179.81717 * 13 12 9 15 15 N 1.40082 * 108.20891 * 0.44120 * 14 13 12 16 16 H 0.96996 * 126.03929 * 179.69446 * 15 14 13 17 17 C 1.34949 * 107.92215 * 359.71830 * 15 14 13 18 18 H 0.96998 * 119.99658 * 359.97438 * 1 2 3 19 19 H 1.00896 * 111.00309 * 176.04524 * 11 9 7 20 20 H 1.00902 * 110.99923 * 300.00687 * 11 9 7 21 21 H 1.08003 * 125.89354 * 0.02562 * 13 12 9 22 22 H 1.08000 * 126.12767 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2302 -3.6447 -0.0005 13 6 2.9189 -4.1387 1.1122 14 7 3.6707 -5.1344 0.7185 15 7 3.4917 -5.2994 -0.6610 16 1 3.9293 -5.9620 -1.2180 17 6 2.6032 -4.3733 -1.0781 18 1 -0.4849 0.8401 0.0004 19 1 -0.1572 -3.4138 1.1908 20 1 0.9651 -2.5259 2.0381 21 1 2.8407 -3.7649 2.1225 22 1 2.2522 -4.2381 -2.0905 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259590112.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:52 Heat of formation + Delta-G solvation = 74.638784 kcal Electronic energy + Delta-G solvation = -9200.395016 eV Core-core repulsion = 7371.128574 eV Total energy + Delta-G solvation = -1829.266442 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.42005 -34.47601 -31.51149 -30.54086 -28.66427 -25.69268 -22.02363 -21.29409 -19.18914 -17.02291 -16.16551 -14.43363 -14.15890 -13.85102 -13.61660 -12.68273 -12.48436 -11.97865 -11.22717 -10.82297 -10.63353 -10.20521 -9.71973 -9.12977 -8.99190 -8.35149 -7.64546 -6.95015 -5.79039 -3.92402 2.53421 3.37381 3.45459 3.48172 3.51011 3.62518 4.56746 5.44706 5.53286 5.63027 6.27385 6.36464 6.58834 6.82013 7.37840 7.59033 7.87770 8.00564 8.27906 8.33509 8.76704 9.13821 9.27395 9.75909 11.25264 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.071697 B = 0.014703 C = 0.013635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.436739 B = 1903.971100 C = 2053.116481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.082 3.918 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.525 4.525 8 H 0.051 0.949 9 C 0.285 3.715 10 H 0.041 0.959 11 N -0.808 5.808 12 C -0.218 4.218 13 C 0.051 3.949 14 N -0.317 5.317 15 N -0.493 5.493 16 H 0.428 0.572 17 C 0.031 3.969 18 H 0.253 0.747 19 H 0.296 0.704 20 H 0.316 0.684 21 H 0.174 0.826 22 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 -6.572 -1.320 7.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.124 4.124 3 Si 0.709 3.291 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.174 3.826 10 H 0.059 0.941 11 N -0.333 5.333 12 C -0.231 4.231 13 C -0.136 4.136 14 N -0.140 5.140 15 N -0.203 5.203 16 H 0.270 0.730 17 C -0.114 4.114 18 H 0.063 0.937 19 H 0.106 0.894 20 H 0.127 0.873 21 H 0.191 0.809 22 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.717 -6.621 -1.220 7.690 hybrid contribution 0.734 0.404 -0.383 0.922 sum 4.452 -6.217 -1.603 7.813 Atomic orbital electron populations 1.70117 1.05615 1.25364 1.47424 1.24962 0.94597 0.98420 0.94455 0.86746 0.80288 0.84655 0.77419 1.20018 1.21242 1.21116 1.20949 0.92221 0.89762 1.53486 0.93042 1.17544 0.86651 0.87824 0.90557 0.94121 1.59226 1.27989 1.41712 1.04354 1.22134 1.06337 1.03244 0.91363 1.23659 0.95385 0.94193 1.00316 1.77104 1.24902 1.21677 0.90359 1.46193 1.37232 1.29668 1.07175 0.73019 1.22374 0.95668 0.93078 1.00306 0.93657 0.89383 0.87277 0.80920 0.81502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.76 12.77 55.43 0.71 -24.05 14 2 C 0.08 2.28 5.39 -17.82 -0.10 2.19 14 3 Si 0.88 21.43 29.54 -169.99 -5.02 16.41 14 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 14 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 14 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 14 7 C -0.53 -14.43 8.71 -34.44 -0.30 -14.73 14 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 14 9 C 0.29 7.00 3.06 -70.01 -0.21 6.79 14 10 H 0.04 1.09 8.14 -51.93 -0.42 0.67 14 11 N -0.81 -18.87 8.45 -6.65 -0.06 -18.93 14 12 C -0.22 -4.58 5.01 -105.05 -0.53 -5.11 14 13 C 0.05 1.01 11.40 -17.37 -0.20 0.81 14 14 N -0.32 -6.04 12.70 30.62 0.39 -5.65 14 15 N -0.49 -8.08 7.36 30.45 0.22 -7.85 14 16 H 0.43 5.22 8.96 -182.62 -1.64 3.58 14 17 C 0.03 0.57 11.90 -17.22 -0.20 0.36 14 18 H 0.25 7.06 8.31 -40.82 -0.34 6.72 14 19 H 0.30 6.22 9.06 -39.29 -0.36 5.87 14 20 H 0.32 7.01 8.19 -39.29 -0.32 6.69 14 21 H 0.17 3.13 7.67 -52.48 -0.40 2.73 14 22 H 0.17 2.54 8.06 -52.49 -0.42 2.12 14 LS Contribution 203.73 15.07 3.07 3.07 Total: -1.00 -31.26 203.73 -5.33 -36.59 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -3.10 Total: 10.12 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.54 Total: -9.70 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 1.26 Total: -56.49 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -31.26 -5.33 -36.59 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590112.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.228 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds