Wall clock time and date at job start Mon Mar 30 2020 02:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00084 * 2 1 4 4 H 1.48499 * 109.46815 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47401 * 300.00722 * 3 2 1 6 6 H 1.48505 * 109.46949 * 60.00794 * 3 2 1 7 7 C 1.37884 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99740 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99893 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47018 * 59.99730 * 9 7 2 11 11 N 1.46906 * 109.47187 * 300.00281 * 9 7 2 12 12 C 1.50697 * 109.47065 * 180.02562 * 9 7 2 13 13 C 1.39871 * 126.04228 * 79.68860 * 12 9 7 14 14 N 1.30832 * 108.20253 * 179.81717 * 13 12 9 15 15 N 1.40082 * 108.20891 * 0.44120 * 14 13 12 16 16 H 0.96996 * 126.03929 * 179.69446 * 15 14 13 17 17 C 1.34949 * 107.92215 * 359.71830 * 15 14 13 18 18 H 0.96998 * 119.99658 * 359.97438 * 1 2 3 19 19 H 1.00896 * 111.00309 * 176.04524 * 11 9 7 20 20 H 1.00902 * 110.99923 * 300.00687 * 11 9 7 21 21 H 1.08003 * 125.89354 * 0.02562 * 13 12 9 22 22 H 1.08000 * 126.12767 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 7 0.4068 -2.5772 1.1992 12 6 2.2302 -3.6447 -0.0005 13 6 2.9189 -4.1387 1.1122 14 7 3.6707 -5.1344 0.7185 15 7 3.4917 -5.2994 -0.6610 16 1 3.9293 -5.9620 -1.2180 17 6 2.6032 -4.3733 -1.0781 18 1 -0.4849 0.8401 0.0004 19 1 -0.1572 -3.4138 1.1908 20 1 0.9651 -2.5259 2.0381 21 1 2.8407 -3.7649 2.1225 22 1 2.2522 -4.2381 -2.0905 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259590112.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:52 Heat of formation + Delta-G solvation = 50.347778 kcal Electronic energy + Delta-G solvation = -9201.448353 eV Core-core repulsion = 7371.128574 eV Total energy + Delta-G solvation = -1830.319779 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.90364 -36.35934 -33.51474 -32.03807 -30.28196 -27.72253 -23.87930 -22.76880 -20.75349 -18.67667 -18.09748 -16.42817 -15.97831 -15.33614 -15.14945 -14.39903 -14.33682 -13.72868 -13.04103 -12.72282 -12.55326 -12.05987 -11.47594 -11.13147 -10.47321 -10.43447 -9.27370 -8.73422 -7.89501 -6.09340 1.07737 1.45407 1.48342 1.58140 2.03599 2.20151 2.55205 3.33811 4.04838 4.27325 4.60937 4.80614 4.89214 5.23164 5.68020 5.81162 5.86133 6.31518 6.58285 6.75382 6.87573 7.23970 7.41432 7.62949 9.13496 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.071697 B = 0.014703 C = 0.013635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.436739 B = 1903.971100 C = 2053.116481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.035 3.965 3 Si 0.943 3.057 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.040 0.960 9 C 0.292 3.708 10 H 0.012 0.988 11 N -0.819 5.819 12 C -0.253 4.253 13 C 0.044 3.956 14 N -0.328 5.328 15 N -0.472 5.472 16 H 0.449 0.551 17 C 0.050 3.950 18 H 0.254 0.746 19 H 0.310 0.690 20 H 0.321 0.679 21 H 0.181 0.819 22 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.303 -6.993 -1.714 8.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.168 4.168 3 Si 0.770 3.230 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.574 4.574 8 H 0.058 0.942 9 C 0.181 3.819 10 H 0.030 0.970 11 N -0.345 5.345 12 C -0.267 4.267 13 C -0.141 4.141 14 N -0.152 5.152 15 N -0.183 5.183 16 H 0.295 0.705 17 C -0.098 4.098 18 H 0.063 0.937 19 H 0.120 0.880 20 H 0.133 0.867 21 H 0.198 0.802 22 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 4.619 -7.077 -1.619 8.604 hybrid contribution 0.482 0.450 -0.308 0.728 sum 5.101 -6.627 -1.927 8.582 Atomic orbital electron populations 1.70229 1.06879 1.26052 1.48664 1.25635 0.95344 1.01488 0.94328 0.85769 0.78964 0.80874 0.77397 1.19890 1.20754 1.20952 1.21232 0.91865 0.91457 1.52884 0.94156 1.17162 0.86784 0.88217 0.89730 0.96980 1.59038 1.28408 1.42786 1.04282 1.21798 1.07699 1.03959 0.93209 1.23769 0.95385 0.94378 1.00608 1.77071 1.24965 1.21517 0.91615 1.46175 1.36200 1.29341 1.06602 0.70502 1.22705 0.94375 0.91886 1.00786 0.93730 0.87957 0.86677 0.80185 0.78709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.50 12.77 21.45 0.27 -51.23 14 2 C 0.04 1.95 5.39 84.66 0.46 2.41 14 3 Si 0.94 43.96 29.54 68.60 2.03 45.99 14 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 14 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 14 6 H -0.28 -13.06 7.11 99.48 0.71 -12.35 14 7 C -0.54 -29.38 8.71 25.60 0.22 -29.16 14 8 H 0.04 2.25 7.74 -2.91 -0.02 2.23 14 9 C 0.29 14.34 3.06 43.42 0.13 14.47 14 10 H 0.01 0.66 8.14 -2.39 -0.02 0.64 14 11 N -0.82 -38.21 8.45 -174.95 -1.48 -39.69 14 12 C -0.25 -10.38 5.01 -20.14 -0.10 -10.48 14 13 C 0.04 1.70 11.40 85.24 0.97 2.67 14 14 N -0.33 -11.78 12.70 -57.02 -0.72 -12.51 14 15 N -0.47 -14.07 7.36 -57.59 -0.42 -14.50 14 16 H 0.45 9.37 8.96 -213.34 -1.91 7.46 14 17 C 0.05 1.68 11.90 83.54 0.99 2.68 14 18 H 0.25 14.16 8.31 -92.71 -0.77 13.39 14 19 H 0.31 12.93 9.06 -89.70 -0.81 12.12 14 20 H 0.32 14.23 8.19 -89.69 -0.73 13.49 14 21 H 0.18 6.40 7.67 -2.91 -0.02 6.37 14 22 H 0.20 5.35 8.06 -2.91 -0.02 5.32 14 Total: -1.00 -64.84 203.73 0.15 -64.68 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -2.20 Total: 24.67 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 2.68 Total: -17.42 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -2.35 Total: -117.92 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -64.84 0.15 -64.68 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590112.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.033 kcal (2) G-P(sol) polarization free energy of solvation -64.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds