Wall clock time and date at job start Mon Mar 30 2020 02:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99472 * 2 1 4 4 H 1.48493 * 109.47063 * 264.86674 * 3 2 1 5 5 H 1.48494 * 109.47192 * 24.87331 * 3 2 1 6 6 H 1.48510 * 109.46696 * 144.87490 * 3 2 1 7 7 C 1.37871 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00239 * 4.78377 * 7 2 1 9 9 C 1.50701 * 119.99928 * 184.79041 * 7 2 1 10 10 H 1.08999 * 109.47153 * 334.90254 * 9 7 2 11 11 N 1.46901 * 109.47264 * 94.90971 * 9 7 2 12 12 C 1.50704 * 109.47074 * 214.90801 * 9 7 2 13 13 C 1.39872 * 126.03889 * 280.02580 * 12 9 7 14 14 N 1.30834 * 108.20082 * 179.97438 * 13 12 9 15 15 N 1.40080 * 108.20772 * 359.97438 * 14 13 12 16 16 H 0.97009 * 126.03893 * 179.97438 * 15 14 13 17 17 C 1.34948 * 107.92746 * 0.02562 * 15 14 13 18 18 H 0.97000 * 120.00150 * 0.02562 * 1 2 3 19 19 H 1.00901 * 110.99710 * 294.25469 * 11 9 7 20 20 H 1.00896 * 111.00319 * 58.20630 * 11 9 7 21 21 H 1.07994 * 125.89719 * 359.71600 * 13 12 9 22 22 H 1.07997 * 126.13260 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.6049 1.9839 -1.3944 5 1 1.3964 2.6815 0.5889 6 1 3.4883 1.4740 0.8056 7 6 2.0046 -1.1940 0.0005 8 1 1.4675 -2.1277 -0.0770 9 6 3.5076 -1.1961 0.1095 10 1 3.9001 -0.2488 -0.2601 11 7 3.8964 -1.3722 1.5152 12 6 4.0693 -2.3274 -0.7125 13 6 4.1286 -3.6717 -0.3307 14 7 4.6799 -4.3493 -1.3046 15 7 4.9888 -3.4564 -2.3389 16 1 5.4060 -3.6847 -3.1844 17 6 4.6045 -2.2224 -1.9509 18 1 -0.4850 0.8400 -0.0004 19 1 3.6123 -0.5795 2.0709 20 1 3.5198 -2.2300 1.8898 21 1 3.7831 -4.0792 0.6079 22 1 4.7060 -1.3137 -2.5257 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259590122.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:54 Heat of formation + Delta-G solvation = 44.719850 kcal Electronic energy + Delta-G solvation = -9227.291546 eV Core-core repulsion = 7396.727722 eV Total energy + Delta-G solvation = -1830.563824 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.87047 -36.56691 -33.88341 -32.05939 -30.50888 -27.93005 -23.77267 -22.79488 -20.67030 -19.11434 -18.35802 -16.60669 -16.13938 -15.27684 -15.09449 -14.70803 -14.37071 -13.55905 -13.23911 -12.97849 -12.66844 -12.10286 -11.75877 -11.13990 -10.77708 -10.38735 -9.53976 -8.92532 -8.28099 -6.34639 1.11789 1.39564 1.42188 1.53038 2.09162 2.23435 2.36178 3.09883 4.00781 4.23756 4.44647 4.78000 4.83911 5.04485 5.42969 5.61908 5.86620 6.25536 6.61532 6.63149 6.74176 6.90071 6.97353 7.34648 8.88725 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.066622 B = 0.015860 C = 0.015707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.178888 B = 1765.077449 C = 1782.213581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.015 3.985 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.239 1.239 7 C -0.538 4.538 8 H 0.023 0.977 9 C 0.251 3.749 10 H 0.048 0.952 11 N -0.840 5.840 12 C -0.209 4.209 13 C 0.049 3.951 14 N -0.330 5.330 15 N -0.472 5.472 16 H 0.450 0.550 17 C 0.046 3.954 18 H 0.265 0.735 19 H 0.329 0.671 20 H 0.331 0.669 21 H 0.181 0.819 22 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.765 -0.444 -2.854 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.184 4.184 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.163 1.163 7 C -0.578 4.578 8 H 0.041 0.959 9 C 0.139 3.861 10 H 0.066 0.934 11 N -0.367 5.367 12 C -0.221 4.221 13 C -0.136 4.136 14 N -0.154 5.154 15 N -0.183 5.183 16 H 0.296 0.704 17 C -0.102 4.102 18 H 0.074 0.926 19 H 0.140 0.860 20 H 0.142 0.858 21 H 0.198 0.802 22 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 10.761 -1.503 -3.521 11.422 hybrid contribution -1.539 1.349 0.029 2.047 sum 9.223 -0.154 -3.492 9.863 Atomic orbital electron populations 1.70089 1.08534 1.28149 1.52055 1.26022 0.95419 1.03209 0.93719 0.85737 0.79342 0.78108 0.79762 1.18908 1.21919 1.16266 1.21932 0.92686 0.92784 1.50349 0.95853 1.17545 0.89924 0.92063 0.86532 0.93387 1.59483 1.66086 1.07169 1.03960 1.20392 1.08368 0.95910 0.97419 1.23738 0.98526 0.92709 0.98638 1.77072 1.22830 1.17318 0.98198 1.46083 1.50461 1.04730 1.17024 0.70383 1.22601 1.00020 0.90868 0.96670 0.92577 0.86027 0.85805 0.80222 0.78421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.74 13.96 21.45 0.30 -57.44 14 2 C 0.01 0.81 5.47 84.65 0.46 1.27 14 3 Si 0.95 41.61 26.99 68.60 1.85 43.46 14 4 H -0.26 -11.07 7.11 99.48 0.71 -10.37 14 5 H -0.29 -12.96 7.11 99.48 0.71 -12.26 14 6 H -0.24 -9.62 6.82 99.48 0.68 -8.94 14 7 C -0.54 -29.41 9.12 25.60 0.23 -29.18 14 8 H 0.02 1.46 8.06 -2.91 -0.02 1.44 14 9 C 0.25 11.20 2.83 43.42 0.12 11.33 14 10 H 0.05 2.11 5.30 -2.39 -0.01 2.10 14 11 N -0.84 -33.94 9.11 -174.95 -1.59 -35.53 14 12 C -0.21 -8.54 5.07 -20.14 -0.10 -8.65 14 13 C 0.05 1.94 11.42 85.24 0.97 2.91 14 14 N -0.33 -12.16 12.70 -57.03 -0.72 -12.89 14 15 N -0.47 -14.35 7.36 -57.59 -0.42 -14.77 14 16 H 0.45 9.60 8.96 -213.32 -1.91 7.69 14 17 C 0.05 1.54 11.90 83.54 0.99 2.54 14 18 H 0.27 15.14 8.31 -92.71 -0.77 14.37 14 19 H 0.33 13.02 9.07 -89.69 -0.81 12.21 14 20 H 0.33 12.89 8.25 -89.70 -0.74 12.15 14 21 H 0.18 6.50 7.70 -2.91 -0.02 6.47 14 22 H 0.20 5.24 8.06 -2.91 -0.02 5.22 14 Total: -1.00 -66.73 200.67 -0.13 -66.86 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: -2.23 Total: 30.09 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 2.68 Total: -19.78 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -2.44 Total: -120.63 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.85 Total: 43.46 kcal Total: -66.73 -0.13 -66.86 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590122.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.578 kcal (2) G-P(sol) polarization free energy of solvation -66.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds