Wall clock time and date at job start Mon Mar 30 2020 01:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39209 * 120.28208 * 2 1 4 4 N 1.32010 * 118.93750 * 179.77157 * 3 2 1 5 5 C 1.33741 * 119.43374 * 0.49900 * 4 3 2 6 6 C 1.41549 * 119.72873 * 179.76690 * 5 4 3 7 7 H 1.08001 * 119.99722 * 6.94301 * 6 5 4 8 8 C 1.40086 * 120.00194 * 186.93768 * 6 5 4 9 9 N 1.30685 * 119.99740 * 7.17561 * 8 6 5 10 10 Si 1.86795 * 120.00360 * 187.17387 * 8 6 5 11 11 H 1.48501 * 109.47305 * 265.20311 * 10 8 6 12 12 H 1.48502 * 109.46965 * 25.20169 * 10 8 6 13 13 H 1.48499 * 109.47286 * 145.19974 * 10 8 6 14 14 N 1.33641 * 120.53828 * 359.49677 * 5 4 3 15 15 N 1.28744 * 121.13105 * 0.24982 * 14 5 4 16 16 H 1.09000 * 109.46861 * 269.97689 * 1 2 3 17 17 H 1.09001 * 109.47657 * 29.97786 * 1 2 3 18 18 H 1.09006 * 109.47105 * 149.97892 * 1 2 3 19 19 H 1.08000 * 120.52971 * 359.97438 * 3 2 1 20 20 H 0.96998 * 119.99645 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2089 1.2021 0.0000 4 7 3.5286 1.1712 0.0046 5 6 4.1584 -0.0087 -0.0010 6 6 5.5733 -0.0492 -0.0011 7 1 6.1396 0.8630 0.1164 8 6 6.2391 -1.2722 -0.1535 9 7 5.5621 -2.3540 -0.4352 10 14 8.0944 -1.3570 0.0460 11 1 8.7413 -1.2387 -1.2854 12 1 8.5498 -0.2447 0.9182 13 1 8.4671 -2.6549 0.6639 14 7 3.4627 -1.1497 -0.0011 15 7 2.1752 -1.1444 -0.0006 16 1 -0.3633 -0.0004 1.0277 17 1 -0.3634 0.8902 -0.5135 18 1 -0.3634 -0.8898 -0.5142 19 1 1.6822 2.1450 -0.0004 20 1 6.0231 -3.2008 -0.5410 RHF calculation, no. of doubly occupied orbitals= 29 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259602097.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:16 Heat of formation + Delta-G solvation = 53.816317 kcal Electronic energy + Delta-G solvation = -8768.990742 eV Core-core repulsion = 6966.132849 eV Total energy + Delta-G solvation = -1802.857893 eV No. of doubly occupied orbitals = 29 Molecular weight (most abundant/longest-lived isotopes) = 165.060 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.55151 -34.24318 -32.95191 -31.98091 -28.29933 -25.22753 -23.67715 -21.59285 -18.15035 -16.77300 -15.23037 -14.46138 -13.96113 -13.62887 -12.88740 -12.19389 -11.81704 -11.46776 -11.33923 -11.09166 -10.48141 -10.21013 -9.95378 -9.57736 -9.51845 -8.23884 -7.38203 -6.80199 -4.88639 2.40358 2.51930 3.00388 3.03503 3.07697 3.80258 4.50318 5.48880 5.60673 5.66990 5.85869 6.02895 6.29120 6.35826 6.50713 6.91988 7.14919 7.33685 7.97300 8.30408 8.37889 8.94164 10.03979 10.59507 Molecular weight = 165.06amu Principal moments of inertia in cm(-1) A = 0.118408 B = 0.014765 C = 0.013264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 236.414014 B = 1895.934354 C = 2110.416091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.153 4.153 3 C 0.132 3.868 4 N -0.541 5.541 5 C 0.313 3.687 6 C -0.387 4.387 7 H 0.097 0.903 8 C 0.063 3.937 9 N -0.709 5.709 10 Si 0.925 3.075 11 H -0.266 1.266 12 H -0.257 1.257 13 H -0.272 1.272 14 N -0.285 5.285 15 N -0.189 5.189 16 H 0.053 0.947 17 H 0.055 0.945 18 H 0.059 0.941 19 H 0.143 0.857 20 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.104 2.174 0.375 2.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.301 4.301 3 C -0.050 4.050 4 N -0.265 5.265 5 C 0.076 3.924 6 C -0.424 4.424 7 H 0.115 0.885 8 C -0.165 4.165 9 N -0.330 5.330 10 Si 0.748 3.252 11 H -0.191 1.191 12 H -0.181 1.181 13 H -0.197 1.197 14 N -0.146 5.146 15 N -0.046 5.046 16 H 0.072 0.928 17 H 0.074 0.926 18 H 0.078 0.922 19 H 0.160 0.840 20 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.459 1.065 0.332 1.207 hybrid contribution 0.241 0.782 0.037 0.819 sum -0.218 1.847 0.369 1.896 Atomic orbital electron populations 1.20096 0.89934 1.01336 1.00791 1.22618 0.97930 0.93368 1.16234 1.23262 0.91677 0.97622 0.92413 1.69235 1.08545 1.30234 1.18457 1.21298 0.96259 0.84258 0.90619 1.19352 0.88037 0.94973 1.40052 0.88481 1.26171 1.01898 0.94921 0.93513 1.70003 1.37917 0.99876 1.25241 0.86017 0.80416 0.79161 0.79614 1.19148 1.18101 1.19655 1.74781 0.96901 1.24078 1.18801 1.73375 1.04088 1.24732 1.02400 0.92827 0.92630 0.92183 0.83954 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.21 36.00 0.37 -0.71 14 2 C -0.15 -3.59 6.89 -81.94 -0.56 -4.16 14 3 C 0.13 3.06 11.00 -17.11 -0.19 2.87 14 4 N -0.54 -14.57 10.47 -12.49 -0.13 -14.70 14 5 C 0.31 9.13 7.40 -157.90 -1.17 7.97 14 6 C -0.39 -10.67 9.38 -37.63 -0.35 -11.02 14 7 H 0.10 2.52 7.86 -52.49 -0.41 2.10 14 8 C 0.06 1.60 5.47 -17.35 -0.09 1.50 14 9 N -0.71 -19.01 11.56 55.55 0.64 -18.37 14 10 Si 0.93 18.30 29.57 -169.99 -5.03 13.27 14 11 H -0.27 -5.13 7.11 56.52 0.40 -4.73 14 12 H -0.26 -5.00 7.11 56.52 0.40 -4.60 14 13 H -0.27 -5.22 7.11 56.52 0.40 -4.82 14 14 N -0.29 -8.52 9.20 30.85 0.28 -8.23 14 15 N -0.19 -5.21 11.57 33.80 0.39 -4.82 14 16 H 0.05 0.85 8.14 -51.93 -0.42 0.42 14 17 H 0.05 0.80 8.09 -51.93 -0.42 0.38 14 18 H 0.06 1.02 8.14 -51.93 -0.42 0.60 14 19 H 0.14 2.60 8.06 -52.49 -0.42 2.18 14 20 H 0.28 6.74 8.29 -40.82 -0.34 6.40 14 LS Contribution 192.64 15.07 2.90 2.90 Total: -1.00 -31.39 192.64 -4.17 -35.56 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: -1.23 Total: -2.06 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -2.00 Total: -3.56 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 1.19 Total: -46.12 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 2.90 Total: 2.90 kcal Total: -31.39 -4.17 -35.56 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259602097.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.377 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds